Microarray Probes on PGSC0003DMT400014363
Probe ID | Chip | Probe Sequence |
---|
CUST_6425_PI426222305 |
JHI_St_60k_v1 |
ACTGGCCCGATTTCTCGGTATTTTATTCTTCTTCCTCCACAATTATTGTTCGTGTTGTTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400014363
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400014363 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G68520.1 |
+3 |
5e-57 |
198 |
125/314 (40%) |
B-box type zinc finger protein with CCT domain | chr1:25709331-25710749 REVERSE LENGTH=406 |
Transcript Sequence (1650 bp)
>PGSC0003DMT400014363 1650 pgsc_dm_v3.4
ATTATATTGAACTGTTCCGCTTTGTTTTTTGGGCTTGTTCAAATTCACTCTAATTAAATC
CTCCGTAGCGTTTACCAATTTCACTATACTCTCCTTTCTTTTTGAAATTAGGATCTCGTT
CTGATATTATACTAGGACGATTGTAAATGATGACTAGTGGAAGCAAGACGGCAAATGCTA
TTGGAGGAAAAACAGCTAGAGCTTGCGATAGCTGTTTGTCAAAGAGGGCTCGTTGGTTTT
GCCCAGCTGATGATGCTTTTCTTTGTCAATCGTGCGATGTTTCGATCCATTCGGCGAACC
AATTGGCGAGTCGCCATGAACGTGTTCGTCTCGATACATGTTCTAACAAATCTACCATTA
CCAAATTAGTCGACAAAACTCATCAACCTGCTTGGCACCAGGGATTTACTCGAAAGGCTA
GAACACCGAGAAATGGAAAAAAGGCACAAATCAGGCAACGGAAAAAGAACGAGGAAAATC
GGGTCCCGGAAATTGGCAGTGATGAAAATGAATTCGAAAACGAAGAGCAGCTGCTTTATC
GAGTTCCGATTTTCGATCCGTTTGAAGCAGAACTCTGCAATGTGCCAGATGAAACTGGAT
CTATTGCTGATTTGGACATTTTGTTGAACACTGAAGATGCATGCGATGATTTGAACCTTC
CTGAATTTCTTTCATCTGATATTGAGCTTGCTGAATTCGCTGCCGATGTTGAAACCTTGT
TGGGAGGCGAAGAAGAACAGAGTACTCGGTTATTAAACGCGGATTTTGAAGATAACAAGG
CGATTAAAATTGAAGTTGAAGACGAAGAAATGAGAGCTGTTGTTGCTTGTCATTTGGATC
CTGAATTGGACATGGAAAGGGAAGGACTGAATTGGAACTTTGATGAATATTATGAAGAAA
GAGTTGAGCAGAAAGTAATGGCAGCAGTAACAGAATTTGTCGCTAGTGCAGAGTACAGTG
GTAGCAGTACTAAATCTGATGAAAAAAACAGACTGTTTCTCAGGCTTAATCATGAGGCGG
TTATTAGTGCTTGGCCAAATCAATCTTCGCCATGGACTAATGGAATCCGACCCCATTTCA
ATCCTGATGACTACTGGCCCGATTTCTCGGTATTTTATTCTTCTTCCTCCACAATTATTG
TTCGTGTTGTTGTATATAATAAAAGCAAAACAAAATTAGTGAGATATAAAACTTCAGAAT
AGAGGCAATTTTTTTTGTTGATTTATCATTGATATTTTTGTATATCTGTTGATTCAGGAA
ACATGTGGAGGTAATTTAGGATATTATGGGGGACATGTAAGAAGTGGCGATGGAGGAAGA
GAAGCGAGGGTATTGCGGTACAGAGAGAAGAGAAGGACCAGATTGTTTTCCAAGAAAATT
CGATATGAAGTTAGGAAATTGAATGCAGAAAAAAGGCCTCGGCTGAAAGGACGATTCATT
AAAAGGAACTCATCGTCCTCCTTTTCAGTGCCTGGTTTTCCTTACATGATGAATAAACGA
TGATGGATGATGATTTGATCTTGTAGTTGATAGAGTTTGTATTACAACATCACCATTTTG
CTTACACTAGCAATCTGGAATGACTTAGGTTCTTTTTATCATAACCTATATTGTTTTTAT
TCAATCAATAAAATAATTAATTCAGCTTTG