Microarray Probes on PGSC0003DMT400014362
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_6622_PI426222305 |
JHI_St_60k_v1 |
AATCAATCTTCGCCATGGACTAATGGAATCCGACCCCATTTCAATCCTGATGACTACTGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400014362
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400014362 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G25440.1 |
+3 |
7e-89 |
281 |
181/411 (44%) |
B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417 |
Transcript Sequence (1502 bp)
>PGSC0003DMT400014362 1502 pgsc_dm_v3.4
ATTATATTGAACTGTTCCGCTTTGTTTTTTGGGCTTGTTCAAATTCACTCTAATTAAATC
CTCCGTAGCGTTTACCAATTTCACTATACTCTCCTTTCTTTTTGAAATTAGGATCTCGTT
CTGATATTATACTAGGACGATTGTAAATGATGACTAGTGGAAGCAAGACGGCAAATGCTA
TTGGAGGAAAAACAGCTAGAGCTTGCGATAGCTGTTTGTCAAAGAGGGCTCGTTGGTTTT
GCCCAGCTGATGATGCTTTTCTTTGTCAATCGTGCGATGTTTCGATCCATTCGGCGAACC
AATTGGCGAGTCGCCATGAACGTGTTCGTCTCGATACATGTTCTAACAAATCTACCATTA
CCAAATTAGTCGACAAAACTCATCAACCTGCTTGGCACCAGGGATTTACTCGAAAGGCTA
GAACACCGAGAAATGGAAAAAAGGCACAAATCAGGCAACGGAAAAAGAACGAGGAAAATC
GGGTCCCGGAAATTGGCAGTGATGAAAATGAATTCGAAAACGAAGAGCAGCTGCTTTATC
GAGTTCCGATTTTCGATCCGTTTGAAGCAGAACTCTGCAATGTGCCAGATGAAACTGGAT
CTATTGCTGATTTGGACATTTTGTTGAACACTGAAGATGCATGCGATGATTTGAACCTTC
CTGAATTTCTTTCATCTGATATTGAGCTTGCTGAATTCGCTGCCGATGTTGAAACCTTGT
TGGGAGGCGAAGAAGAACAGAGTACTCGGTTATTAAACGCGGATTTTGAAGATAACAAGG
CGATTAAAATTGAAGTTGAAGACGAAGAAATGAGAGCTGTTGTTGCTTGTCATTTGGATC
CTGAATTGGACATGGAAAGGGAAGGACTGAATTGGAACTTTGATGAATATTATGAAGAAA
GAGTTGAGCAGAAAGTAATGGCAGCAGTAACAGAATTTGTCGCTAGTGCAGAGTACAGTG
GTAGCAGTACTAAATCTGATGAAAAAAACAGACTGTTTCTCAGGCTTAATCATGAGGCGG
TTATTAGTGCTTGGCCAAATCAATCTTCGCCATGGACTAATGGAATCCGACCCCATTTCA
ATCCTGATGACTACTGGCCCGATTTCTCGGAAACATGTGGAGGTAATTTAGGATATTATG
GGGGACATGTAAGAAGTGGCGATGGAGGAAGAGAAGCGAGGGTATTGCGGTACAGAGAGA
AGAGAAGGACCAGATTGTTTTCCAAGAAAATTCGATATGAAGTTAGGAAATTGAATGCAG
AAAAAAGGCCTCGGCTGAAAGGACGATTCATTAAAAGGAACTCATCGTCCTCCTTTTCAG
TGCCTGGTTTTCCTTACATGATGAATAAACGATGATGGATGATGATTTGATCTTGTAGTT
GATAGAGTTTGTATTACAACATCACCATTTTGCTTACACTAGCAATCTGGAATGACTTAG
GTTCTTTTTATCATAACCTATATTGTTTTTATTCAATCAATAAAATAATTAATTCAGCTT
TG
