Microarray Probes on PGSC0003DMT400013905
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_49786_PI426222305 |
JHI_St_60k_v1 |
AGGAATTGTCGGAACTCTTCTTATTCCGGTTGTACACGGTGTCTCGGTGCTTTACAAAAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400013905
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400013905 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G28100.1 |
+1 |
3e-134 |
394 |
200/276 (72%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13965300-13966697 REVERSE LENGTH=304 |
Transcript Sequence (1506 bp)
>PGSC0003DMT400013905 1506 pgsc_dm_v3.4
AAACAATGTTGTGAGTTGTGACCACCCACTTCCATTTCTCTTTCACTCCCACTCCCTATT
TGCACAGTGACACTCGCCTTTTTTATTTTCTTTTTTCTTTCTTCGCTTCATCTCTTTCAT
GTAAAAACCCACTCTAGTACTTTTTTATTCGCATCTCCTGAAACTCTCCCTTTTTTGGTT
TAAAAAGCAAAACACTGAGAAAAAGAAGAAAAAATCTCTTCCCATTCCACTGTTAAGTTT
AAAACTAAACAAAAGTTCGCTTCAACTTCCAACTCATTTGCCTTTGTTTTTTTTGTTTCT
ACTTTACCAATTTCTACAGAGAAAATGAGAGTCGAATTGAAAATCAGACTTTTCAGGTTA
CTTTTGACGCTGCTTTTTGTGTGTAAAGGTTCGTTTGCTGGGTTACTTGCTGAACCGGCG
GAGCCATTGAAGCCAGGTGATTACGCTTCTAACACTGTTCCAGCTTTTCCGGTTCAGACG
GAGTCACAGATATGCCGGTTGGATTTGTCCGACGAGCTATTTGGTGGAGTGAGCGCGGCG
TGCGGACAGAACCTGGACCGGAGCCGTTGCTGTCCTGTACTGGCGGCTTGGTTATTCGCA
GCTCACGCGCGTTCAGCTTTGCAAGTTTCGGGTGCGGCTGCACCAGCAAGCTCCGACTTG
CCGATGATGCCGGATGACTCACAGAAATGCGTTAATACGCTTCAGAATTCTCTTCAGAGC
CGTAACATCCATCTCCCGCAACCTAATGGTACATGCGATGCCGTTTTGTGTTTCTGTGGT
ATTCGTCTTCATCAGATTACCTCCCTTAGCTGTCCAGCGGCGTTCAACCTCACCGGCTCG
AAGAATGCAACTCCGACCGCCGCCGTCAGAAATCTCGAGAGGAATTGTCGGAACTCTTCT
TATTCCGGTTGTACACGGTGTCTCGGTGCTTTACAAAAGCTCAACGGTGACGGTGGAAAA
AATCGAACACACAAAATGGATGTAACCGGTGGGGATAGAGTGAGCAAGATGCTAAGCAGA
GACTGTCAGTTGATGGGATTGACATGGTTACTGGCACGCAACAAGACGGCGTACATACCG
ACGGTTTCTGCTGTATTGCGCGCTATCATGTACAGTGCGCACCCACCGCATGAGTCCAAG
TGTAGCCCGGACCAGGAGAACATGCCACTAGCCGTCGATTCACTACAGTTTGAAAAAAAT
GATTCATCTTCACCGTTCGTTGGCGTTTCTGGTTTTGCTATTTTGTTTACTTTTTTGCCC
CTAATCATTCTACTGAATTAGAGAAGAAGAATCACTCTGTTATTTTGCTCATGTGATGTG
ATTTTGGGGGATTCACGTGAAATGTTTGCTAGTTGACAAAATCGGAAGAGGGGTGAAAAA
GGGGTTATTTTGTCTTTTTGCTCCACTGTAAATTCAGGTTATTATTTTCAAGACAATCTC
TTTTTAACAACTAGTGCCAGAAAATATTACCCTTCTTTTATGTGAATCTCCTGTTTAACT
TTTGAA
