Microarray Probes on PGSC0003DMT400010663
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11373_PI426222305 |
JHI_St_60k_v1 |
TTGGTAGCCTCTTTGCCAAGAAATAATGATCAGAGACGGATTTAGAATTTTAAGTCCATC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010663
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Source Transcript PGSC0003DMT400010663 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G47070.1 |
+3 |
7e-16 |
71 |
41/83 (49%) |
LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17337205-17337507 REVERSE LENGTH=100 |
Transcript Sequence (618 bp)
>PGSC0003DMT400010663 618 pgsc_dm_v3.4
CTCATGCCACAAAACAATTTCATTTAACAAGATGTATTACCTACCCTAACAATAGTAGTA
CTTGCCCCTTTATTGATTCCATCAATTCCTATACAAAAATTCAAGAAATATTTCCAATGG
CTTCTTTGAACCTTTTTGTTCCTCCAATTGCAACTACTACACAAAGAAGAGTAGTATATA
CTAGAGCCACATCAACAAAAAGTTTTGGAGTAAGTAGTGAAGAGAAATCAATTTTGGATT
TTGTCCTTGGGGCATTACAAAAGGAAGACCAATTATTAGAGACTGATCCAATCATGAAAA
AAGTGGAGGGCAAGAGTGGCACCACCACAAGTTTTAACAAGAAATCAGTTTCAATCTCTC
CTCCTCAGAAGGATTACAATGGCTTTGGAGGCTTTGGTAGCCTCTTTGCCAAGAAATAAT
GATCAGAGACGGATTTAGAATTTTAAGTCCATCAATATAATAAAGTGTTATAGAACATTG
GTAAATGTAATGCATTTAATCTTATATGTGATCTATACGTCTTTCCTTTGTAATTTGATC
TTCAATTCTATAATTCACTTGATGTATATGAAGTATATATGAACTTATTTCATGTGTTGC
ACAAACATTGATGAATTT
