Microarray Probes on PGSC0003DMT400010394
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28740_PI426222305 |
JHI_St_60k_v1 |
GCTTCCATTTATTTCATCTGAAGTGTCTTGTAGAGTTGCTTTTTATATATGGCCTATCCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010394
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400010394 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G08130.5 |
+2 |
2e-56 |
204 |
153/310 (49%) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2609571 REVERSE LENGTH=532 |
Transcript Sequence (2926 bp)
>PGSC0003DMT400010394 2926 pgsc_dm_v3.4
TGAGACCCATTTTCTCTTACTCTTTTTTTTTTTTTTTTTTCCATATTTAAGGAAGCAACC
AATCGAGGCTGGTGTTTGTTCATCGTTTGCGTTAATCAAGACGAGGCCCTACCATTAATC
CTTCAAAAAATTCACTGTTTCGATCAACTTATCATTACACAGTTCTGTTTTCATTTTTTA
CAACGAAATCTAAGGAGAATTATGCATTTTACACCACCAAATCATATTACAAATTTGGTG
GAATAAACCTGCATCATCCCTGTTTTTTCAAAGAGGATTGTTATTAACAATTTTATTAGT
TTGAGACTGAGACGTACTTAGTTGAAAAAAGGACGGTTTCTGATGTGACTCAAATCCTCT
GTTGGAGGCAGATCTGCTTGGAACTAGAAGAGGTTTGGGTTTGAAGTTGTTGAATTACGC
AACAACTTTTCGAAATTCAGTTGAATTGTGCTGCATTTTAGTCGCTTTTGTTTATTCGAA
ACACAGAATTCTGATTTGAATGGAGTTACCTCAATCCAGGCCTTTTGGAACAGAAGGGAG
GAAGACTACGCATGATTTTCTTTCACTATATTCACCTATTGAACAAGATCCAAGACCTCC
ACAAGGTGGCCACCTAAAAACTCATGATTTCTTTCAACCTCTAGAACAAGCAAGGAAGAC
AGTTGGGAAAGAAGAAAATAAAATTGAGGTAGAGGCTATAGAAAAGCCGCCTCCATCAGG
AGAACATATTCTTCCTGGTGGCATTGGCACATATAGCATTTCTTATTCACAGCAAAGGGT
TCCAAAGCCAGAAGCAAACACATTTGCTGTCACACAAACTAGCAGTACAGATAGAGACGA
TAGAAACTCAAACTGCAGTTCTTACTCGGGAAGTGGTTTGGCACTATGGAATGAATCTGC
CATGAAAAAGGGAAAGACTGGGAAGGATAATCTCGCTGGAGATAGACATGTCGTAAGAGA
AGCAGGTTTAAACATTGGAGGAGGGAAACCTACGACATCATTAGAACGGCAATCACAATT
GTCTTCAAATCATAATCATAACACTGCAACCTTGAGCTCACACTCATCTCCTCAGCAACC
ATCAGCTATGGAGAATCAGAGTTTCATACATATGATAACATCGGCAAAGAATGCACAGGA
AGATGACGATGACGAAGAAGAAGAATTTGTTGTTAAGAAAGAGTCACCTTCACCATCCAG
AGGCAATTTATCAGTAAAAGTCGATGGGAAAAGCACTGATCAGAAGCCAAATACTCCACG
CTCGAAGCACTCAGCAACAGAGCAAAGAAGAAGAAGCAAGATCAATGACAGGCATGTTTA
CAACCCTAATTTAGAGTTTTGAGAAAAGAAAAGGAAAAGTTTTTGGCATAGTGACTATAT
TTTGTGGGAAGGGGAATGTTAGTATGATCTGACTTCCAAGCATTGATGCATTGACTAGCA
CACTCTTCACTCAGTTTTTTCTAGCCTCTTACTTGAGGCAGAAGCTATCTCTGTCTAGAT
ATCATGTGTTAGTTGGAACATTTTAATTCCTTTGCTGAACAATTACTAGTCTTGGTTCTG
TCAATCTTTTACTGTGTAACCGGACTTATGAACAGTCGAATAACATGACTGTCAATGAAA
ATTGAACCATTACCTTTGGAACTTTTTAATCAGATTTCTGAAGTTGAGAGAGATCATCCC
TCACAGTGACCAGAAGAGAGATAAAGCATCATTCTTGCTGGAGGTTATTGAATATATTCA
ATTCCTACAAGAGAAAGTGGACAAATATGAGGGATCCTATCAAGGTTTGGAGAATCAACC
TTCAACATTACCTTGGAATAAGTGTCATAGTATGGCTCAAGGTTTCATTGATCATTCTCA
AGGCACAAACAGTGCGTCTAGTCATGCACTTATTGCTGCAAAGTTTGACGAGAACAAAAC
TGGAATCTCTGCTACAGGGCCTGTCAATGAACAGACACTGGAGCCAAACAGAACTTCCAG
TGTGAAAGAAAGCAGTTTTCTGTCTGAATTAACAAACAGGGCCGCAACACTTTGTATGCA
ACCAAACACATTCCCATTTGATGGAAATATTAGCATAGCATCGCTGCAGTCAATAGTGGC
GCCTGATACTGGCTCGTTGGAATTGAAATCTCAGCCTCAATTTCCATCAAGCAGATCGAA
TATGACTAATTATGCTGTTACAAATGACAAGCTAAAAGGGCAAGAGGTTTCTACAGAAAG
TGGTACAATCAGCGTCTCCAGTGTCTATTCTCAAAGGTTGATGAACACACTGAAACAAGC
ATTGCAGAGTTCTGGAGTAGATTTGTCACAAGCCAACATGTCAGTGCAAATTGATCTCGC
GAAAATAGCCAATGATAGATCAAATGCTTCAACGTCCAATTTTAAGGGTGACAACATTTC
CTCAAGAAATCAACCAACTCCACAATTCATTGATACAAGCACAAGAGAGGAGTCTGTCCA
TGCCTTCAAACGGCTCAAAACAAGTTAAAAGCAAATTTAACACACAAGTATTCTTTTGCA
ATTGATTCAACTAAAAAAATTCCTTTCCCTTCTGGTTCTGAAGGGATATTCATGTATACA
TCTGGTATAGAAAATCTCCCCTAATCAGATCATAAGCTACTGTAAATGTAATTCATTTTC
TTTTCCTTTTCGATTGTTTGGCTGCACAGAATTCTTCTGACTAAAGTTCGATATTTATTA
CTTGTAGTGAACTATCAAGAAATCATATATCAATATTGAGGCTTCCATGCTCATGTTGAG
AAGCCGCCTTTTAATATAAGGCTTCCATTTATTTCATCTGAAGTGTCTTGTAGAGTTGCT
TTTTATATATGGCCTATCCATGTAATGTAAAGTATTTAGATTAGTGTAATCATTTATTTT
TTTTCGTTTTATCTTTTATTTTTGTAGCTATTGACTTGCACCAGAG
