Microarray Probes on PGSC0003DMT400010229
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3623_PI426222305 |
JHI_St_60k_v1 |
CACCGCAATTCGGCTCATCCAATTATCAAGTGAATATCCTCTTTAATAATGTACTCTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010229
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400010229 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G36920.1 |
+1 |
2e-107 |
338 |
223/332 (67%) |
Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432 |
Transcript Sequence (2303 bp)
>PGSC0003DMT400010229 2303 pgsc_dm_v3.4
AAAGAAAAGAATACAACTAGAGGGAGGGATAGAGAGAGAAATAGAGGAGAATATTTAAAA
GTCTAGGAAACTGAAAACAAGTCCTTTTGTAGCAATAGCCAAAACCACCCACCTCACACA
TAAAAAAAAAAATCTGAAATTTTTTCAACTGTTTTCTTTTTTATAATTTTGAGATTTTGG
ATTGGGTATTTTTTGTAGAGAGAAATGTGGGATCTAAATGAATCAGAAGAAGGTTGTTCT
ACTCCGATAGAGTTTGAATGCGATGATGAGAAAGGTAAACGGGTCGGATCCGTTTCGAAT
TCAAGTTCATCGGCTGTAGCTGTTGATGATATTTCTGAAGAGGAATTAGATGGAGAAAGA
GGGAAGAAAAAGAGAGGTACTCCTCCAAGCAAAATTTTCGGGTTCTCTATGGTGGGTCCG
GGTAACGGCGATGAAGAACAGCCGGTGACCCGCCAGTTTTTTCCGGTTGATGAGTCTGAA
ATGGGTGGTGTTGCTGCTGCTGAAAATGGATCCCCGAATTTTCCCAGAGCTCACTGGGTT
GGAGTTAAATTTTACCAAACGGAGACACTTGGCAACACGGGATTGGCGAAGCCTGTAGAT
ATGGTTCAGCAGCAACAGCAGCAGCCTATTAAGAAGAGCCGCCGTGGACCAAGGTCTAGA
AGCTCACAGTACCGTGGAGTTACCTTCTACCGGAGAACTGGCCGGTGGGAATCTCATATA
TGGGATTGTGGAAAACAAGTTTATCTAGGTGGATTTGATACTGCTCATGCAGCAGCTCGG
GCATACGATAGGGCAGCCATCAAATTCCGGGGAGTAGAAGCCGACATAAACTTTAGCTTA
GAGGATTATGAATCCGATTTAAAACAGATGACAAGTTTAACAAAGGAAGAATTTGTGCAT
GTGCTCCGAAGACAAAGCACTGGTTTTCCGAGGGGAAGCTCCAAGTATAGAGGAGTGACT
TTGCACAAATGTGGTAGATGGGAAGCTAGAATGGGACAGTTCTTAGGCAAAAAGTACGTT
TATTTGGGGCTCTTTGATACTGAGATTGAAGCTGCCAGAGCTTATGATAAAGCTGCCATC
AAGTGTAATGGCAAGGATGCAGTTACAAACTTTGATCCAAGCATTTATGAAGATGAACTA
AATTCAATTGAATCTTCCGATAACGCGGCTGATCACAATCTGGATTTAAGTTTGGGTGGT
TCAAGCTCAAAGCAAGGAAGCCGAGAATTGGGGGATAATAGAGGTCAAAATTCTTCATCA
ATGCAATTGGATATTGATTGGCAGCGCCATGGTTTAAGGCCTGAGGTATATTTACACGAT
CAATTGCTATATCTTGTTTTCGTTGTGAATTTTTTTTTCTTCTTATGCAACATGTTTTAA
TTTCCAGAAGCAATCTTCTGCCTTAATTGATGCTCGAAGAAGAGAAAACGGGTACAATGA
AACAGAAACTTTGCAACTTTTAAGCCAGACGCACTTGCATTCTCCAGTCTCCTTGAAGCA
TAATAATAGTCAAGTGCAACGGTTTAGCCAATTTATGAGACCTGGTGATCAATCCCATAT
GATTCAAATGTTTCCACCGCAATTCGGCTCATCCAATTATCAAGTGAATATCCTCTTTAA
TAATGTACTCTTTTTTTATTTTCAAATCGTGTTTTTTTTTTTTTTTAAATGTTGTGGCAT
GTTACAGATTCAATTTCCAAGTGGCAGCAATGGAGGCAGAATTGGAGGTACAAATGTAGG
AGATTTATCGCTTGCGGCGACAAGCAATGGTTCTTCACAGTGGCAATCCAATTTTCCTCC
TCAGATATTTGCAGCTGCTGCAGCATCATCAGGATTCCCTCAGCAGATAGTAAGACCTCA
AAATTGGTCCTCAGAAAATGGCTTCCATCACTCACTCAGGAGACCATCATGACTTGCTAT
ATTTCTACTTGTGTTTTTTTTAATATAATTTGTAAAGAGTAAAGGGTTGATATTCTTAAT
ACTCCATATATTACCTAATACTCTTGGTTTGAACCCAGAAAAGAAAAATTAGAAGGAAAA
AAAAAGGGTAGACAAAAAGTTTTGGAAAATATGTCTCCTCATTAGTTTGTCCAATACTAA
CTGATCGGCAAGCTTTTCAACTAGACTTGTATTACTAGTTTATTCTGACTATGAACTGCC
AATTTGGCCCATTCTCACTCATTGTAACTTGTATACATTTGGGCACTAGCTTCTCATGCA
GTATTTGAAATATAATTTATTATTCGTTTGTGTTTGCTTTTCTTGTAACAAAAGTCCAAC
TACTATGTCTTTTTGAAGTTGAA
