Microarray Probes on PGSC0003DMT400009051
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5415_PI426222305 |
JHI_St_60k_v1 |
CGGAACTTAACAATTTGGAGCTGATGAGCATGATATTCAACTGTAATGAAGTGTGTAAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400009051
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400009051 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G36500.1 |
+1 |
9e-13 |
63 |
44/112 (39%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17226139-17226507 REVERSE LENGTH=122 |
Transcript Sequence (685 bp)
>PGSC0003DMT400009051 685 pgsc_dm_v3.4
GTTTTGTTTTCTTCATCTCTCAATTTCCTACTTCATTTTAAGCAGCCTATAATTCAAGAA
ATTTGGGTGTTTGTAACTTATACACCAAATAATTAAATCTAAGCCATGTTTAGAGCAATG
AGTACACGAAGGGACTACAGAGGATACGGAGTATTGAACAAGGAAGATGAGGAGGAGGCA
AGTGCTCCAATACTGGGAAAGCCAAAATTGAGCAGAAACAGAACAGTTCCTGCTGCTGCT
AAATTCTTTAGCTCTTCATCAAAGAAGGTCACATCCGAGGACAATTTTCGTGCAAGTGCT
CAGGTAAAAGAAGCGAAAAAAGCAAGCAAGATTCATCCGATATTTAGTCTATTCGAAACG
AAGAGGAAGAAGAAGGCAACTGCAAGACCTGAATTCTCGAGGTACATTCAGTATCTTAGA
GAGGGGGGTTTTGGTGATGTTTTGCAGACGACTACTTAATTCCTACAAAACCAACTTGGC
CGCAGTTAATTAGTGATTTAAAATATGTTATGCGTAAGTTAATTTGGATTTTGTGGTACA
GAATTTTTTATTTTATAAATTGGTTTACTATATATGGTCTTACGGAACTTAACAATTTGG
AGCTGATGAGCATGATATTCAACTGTAATGAAGTGTGTAAATATACGTCATAATGCAAAC
TTGTTTTATCTTATTTCTTCCGAAT
