Microarray Probes on PGSC0003DMT400008367
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_17421_PI426222305 |
JHI_St_60k_v1 |
CTCTTTCCCCTGTTACAGAGATTGTTTCCATACTGTAATGAGAAATATTGCTGGTTTATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400008367
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400008367 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G57680.1 |
+1 |
9e-24 |
102 |
91/300 (30%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:21362749-21363837 REVERSE LENGTH=362 |
Transcript Sequence (1626 bp)
>PGSC0003DMT400008367 1626 pgsc_dm_v3.4
GAAATTTCTCAAAATCCACTAACCAAAAATATCTGACTCTTCTTCTCTCTCCTTCAAACT
CAAATCCTCTGCAAATTTGCCTGTTTTCCCCCAAAACTCTACCCGCCATTTCCGACCTCC
CAAAACAATTATGCAATTCCAACAACTAATCACAAAAAATAAATCACCGTTCTATCACCA
CCGTCACCGGCACGGTGGCCGGCGAATCATTCACCACCAACCACCACCACAACTTTCTCT
ATGAGAAAATCACCTTTCTATGTTGCTAATGGCTCCGAAGCATCTCTTTCATCTTTTCCG
TTAATACCAGGTTCTACGATATTATCTACGCCTTCACATACCCCTTCCGATTTCAATTCC
AGTTTGCCGTTGCCGGATCCATACTCAAATTCTACTTTCCTTTTTCCTTCTGCTCCTGTT
GTTGACGGAACCTTTGATTTCGTAACAATTTGTTTTATTTCCGGTCTTCTTCTTCTTTCT
CTACTTTCGTTTGTGTTTATCTTCCATCTCCGTCTCAGATCTCGTCAATATCCGCATCTT
AAAAATTTCAATTCTCTGTGGACCGTCCGTTTACTCCTTGTTTCCTTCGCTATTCTTTGG
GCGTTAAACGAAGTTTTCCGGCTGCATTTCATTCGCCGGAATTACATTCTCCCTTTCTTT
CCACCTCTAACCCTAAATCAACAAGCAAATCTGTGTAAAGTTCATGTGGTTCTCTCCGTA
GGCTTATTTGAACCGGCGTTCTTAACCACCCTTCTTTTCTTAGTAAACGTGTCCATTAAG
AAACATAGTCCAAGTGGAATTTGGGCTGTCATCGTCGTCTGGCCGATTTGTTTACCTCTT
TTGTTGCTTCAGATCCTTGCTGTGTTCTTCTCCCCATTGCAGAAGCATCTACCGATATAC
CTGCATTCTAGCTCCTTCGTTTCAACAGATATCTTGGGGAACCAGACGGTTCTCTGTACT
TACCCTGTGTATAGTTCTATTTTGTTTGGGGGATTTACTGTTGCTTACTTGTTAGCCTTT
GTAATTTCGTGTTGGAGAGTTATCTCCTTTGTAATTAACAGAAAAATTCAGGTACGGGTG
AATTTGCTGGCGACTTCTTTCATGATTGCGTTGCCTTTGCAGATTCTGTGCTTAGTATCA
TTACCAATTCGGCCGCCGGATGATCCATTCCACGGTGTTTCCATGATGGTGATGTTCTTG
GCTGTTGCGTGGTGTATAACGGTTGGGGAGGTTACTTTGGTAATTAAGCCGATTGCAGAT
GCATTTCTCGCTGGTAGAGCAAGTAGCTGCCGTTTGAATCCCGGAACTACGTTAGGACAT
CCGAACGGTGATGGAGGAAGAGTGGAAGGACGGAGTTAGTAGCAATGAGAAGTGGCCATG
ATCGCCGACGGAGGACATCATGGTCATTTTACTAATCAACAGAGGGCGCTATAGTTATTA
GAGTTAGTATAGTTTAATATGCCCTCTTTATGTAATTCTTAGAAATTAGTGTACCATATA
TGTAATTAGCAGCTTATGAAATAGCCAACTCTTCTCTTTCCCCTGTTACAGAGATTGTTT
CCATACTGTAATGAGAAATATTGCTGGTTTATATTGTTACAGATGAGCAACGATTTCATA
TTGTCG
