Microarray Probes on PGSC0003DMT400008200
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_17452_PI426222305 |
JHI_St_60k_v1 |
TGTTTTTGTTCTATTCCGAGACTTGTATTCAATGCAGCAGTTGTTTAAAGCACCTTCTCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400008200
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400008200 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G16820.1 |
+2 |
6e-94 |
305 |
203/436 (47%) |
heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481 |
Transcript Sequence (2427 bp)
>PGSC0003DMT400008200 2427 pgsc_dm_v3.4
TACCAAAGGTAGTTTTATGTAATAGGTAGGTAGAATTGTTTTAGATCAAATCACAGATTA
TTCTATGCTTTTGAGCCAAGGCATTTTGTCACAAAATTTAGTACTGCTTTATTTATGTAC
ATACCGAATCGCCAACATAGTTGATGGAATGTGATCCTGCAGTTAAGATGCTCAGGAGTT
CCTTAGACCGTTGCTAGGAGATATTGCATAACATGGGTCTTTAGAGTCCAATTGAGTGGA
CTTCACTACTTTCCAGCTAGAGGTCAGGCTAGACAGTGGTGGAGAGCTTATGCAGAAGCA
AGCCAGCAGGTTCACTTCCTCCCAATTGAGCACAATTTGGCATCTCTTCCCACGTTTATA
TTTATCCACCAAACAACCAGGCAAAGTTATTTATTTTCATATGCCTATTAACCATCCAGT
TTAAATTTTTGTAAGTAATAGAGCTTGTCAAATTCTTTTTGAGTAATAGATGGATTTCAG
GGATTTGTTTGTGACCGGGGAGTTATGTTTCTTCAGAGTGTAGTTCTGCCATTGTGGTGT
ATTCTGCCTTTCTTTAATATGATATGGAGTCTCTTTGTACCCGCGGGGAAACTGTAATTC
TTTTTATAGTTTGCTTTTCCCCTTCATCAATCAGGGTTTCAGGAAGGTTGATCCAGACCG
CTGGGAATTTGCAAACGAGGGATTTCTTAGAGGCTACAAACACCTATTGAAGAGTATAAG
CAGGCGAAAACCCCCTCAGGTGCAGGGCCATCAACAAACCACCTCCAAAGTACCAAATGC
ATCTGTTGCATCCTGTGTGGAAGTTGGGAAGTTTGGAATAGAGGAAGAGGTGGAAAGGCT
TAAAAGAGATAAGGATGTCCTTATGCAGGAGCTGGTTAAGTTGAGACAGCAGCAGCAGGA
GACGGATCACCAATTGGTGACTGTTGGGCAGCGCGTTCAATTAATGGAGAACAGGCAACA
ACAAATGATGTCGTTCCTTGCCAAGGCCATGCAGAGCCCTGGCTTTGTAGCCCAATTAGT
ACATCAACAGAATGGCAATAACAGGCATATTACTGGGCTTAATAAGAAAAGGAGACTTCC
TGAACAGTCTGAAGAAAATGTTGCGTGCAATCCTGTCAATGCTTTGCAAGATGGACAGGT
AGTCAGGTATCAACCTTCAATGACCGAGGCTGCAAAAGTGTTGCAGCAGCAGATTCTGAA
AATAAATGCATCTGGGAGGCTGGACAACCGATTAAACACAAATGACTGTTTGACTAATAA
TCCCCTCCCGCCTCAAAATTCTCTAGACAGTAGCGGTGCATCCAGTTGTATTTCCAGTGT
TACCCTCTCAGAAGTAATGTCAACTTCTTCACAGCCTAATCTAATGTCAGATTCAGGATT
TCCATTCAACTCTTGTTCATCCATCATATCTGAGACCCAATCATCCACTACTGTGGTTCC
TGGGGAGGCCAACATTCCCGTATTACCTGAAGCTGATGCATTGAACTCTCAGGCAGTCCA
TGATTTGCCTGAATTTTCTCATATTCTTGGAGTAACTGACCTTGACCTTAATATGTCTGA
GACTGGAAATGTGCCAGATATTGACACAGCGCAAGGTATTTTGGATGGTTTAACAACAAT
TGTCTCTGATGAATTTTCAGCAAACACAGATGGTGATGTTTTGCTGGATGACATGCCTAA
GCTTCCAGCGATTAATGATATTTTCTGGGACCAGATTCTCTCTGCAACCCCTGCAAGCCC
TCTCACTGGGGATACGGATGAGATTGGTTCCCTAGTCGTGGAAGAGGATTTCCTAGGAGT
TCAGGAGAGTGATTGGGATAAACTAAAGCATATGCATCATCTTACTGAACAGATGGGGCT
ACTTTCATCAGTTGCCCAGATTTGATGATTTCATGTTTTTTTTAAACGCTTGCAATGATG
CAGGGTGTTCTGCGTTAGTGATACCACCTTGAGCACAACTGCTGAAGTGTGGTGAACTTC
TAGAGGGTGTAAAGCAATGAACTTCTCCCCATGTGGTAATATTTTTTTGTCAGGTGGATG
CTCTGAACTGGTGCGCATTAACAATCTTGTCTTGAAAGACTTTCTTCACTACTAATAATG
ATGTTCTGTGTAGTTAAAAAGGGGATCCCCAAAAGACTAGTTTGGTGTATTTTATTCCGG
CTTTTTGTATGTACATTTATCTGGCACAATGGGTTAGTTAAAAAAGAACACTAAAATGTT
CTTTACTTATTAAGAAATTGAAATAGGGATGCAAAGAAGTTGCTGCAGAGGATCTGTATG
TACCTTTTATTGTTTACATAATGATGATTTCAACGAAGATGCAAGCAGGATGAATGAACG
TCTTGTTTTTTGTCCAAATGTATTGTATGTTTTTGTTCTATTCCGAGACTTGTATTCAAT
GCAGCAGTTGTTTAAAGCACCTTCTCC
