Microarray Probes on PGSC0003DMT400008199
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_17532_PI426222305 |
JHI_St_60k_v1 |
TGTTTTTGTTCTATTCCGAGACTTGTATTCAATGCAGCAGTTGTTTAAAGCACCTTCTCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400008199
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400008199 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G16820.1 |
+1 |
1e-132 |
406 |
249/487 (51%) |
heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481 |
Transcript Sequence (2291 bp)
>PGSC0003DMT400008199 2291 pgsc_dm_v3.4
CTCGTGCGCAAATCTACCGCTTCAAGACCCTTCTACCGTGCTCTCGTTGCCTATTTCCAC
CGCTTGGTGCCAGTCACTCACTCACTCACTCACTCAGTCCCTACTCATTTCTTCTCTCTC
CTTCTAGTTGTTCATTTTTTCTTCTCTCTGTCTCTATCCGGATCTCGATACTTCCATTTT
CCGCATAATTTTTTCTCTGTTTGTGTTTGTTTGTGGAGCTTGTGAATCACTGGATTGTGT
TGTGAAAGCGGTGCGATTGTGAAGTGGAAAATGGACGGAGTTCATGAGGCTCCGGTGGCG
GGGAACTCGTCGTCGCCGCCTTTCCTGAACAAGACGTATGATATGGTGGATGATCCATCG
ACGGATTCTGTGGTGTCATGGAGTAAGAGTAACAATAGCTTTGTTGTTTTGAATGTGCCG
GAGTTTGCTAGAGATATTTTGCCCAAGTATTTCAAGCACAATAACTTCTCCAGCTTTGTC
AGACAGTTGAATACTTACGGTTTCAGGAAGGTTGATCCAGACCGCTGGGAATTTGCAAAC
GAGGGATTTCTTAGAGGCTACAAACACCTATTGAAGAGTATAAGCAGGCGAAAACCCCCT
CAGGTGCAGGGCCATCAACAAACCACCTCCAAAGTACCAAATGCATCTGTTGCATCCTGT
GTGGAAGTTGGGAAGTTTGGAATAGAGGAAGAGGTGGAAAGGCTTAAAAGAGATAAGGAT
GTCCTTATGCAGGAGCTGGTTAAGTTGAGACAGCAGCAGCAGGAGACGGATCACCAATTG
GTGACTGTTGGGCAGCGCGTTCAATTAATGGAGAACAGGCAACAACAAATGATGTCGTTC
CTTGCCAAGGCCATGCAGAGCCCTGGCTTTGTAGCCCAATTAGTACATCAACAGAATGGC
AATAACAGGCATATTACTGGGCTTAATAAGAAAAGGAGACTTCCTGAACAGTCTGAAGAA
AATGTTGCGTGCAATCCTGTCAATGCTTTGCAAGATGGACAGGTAGTCAGGTATCAACCT
TCAATGACCGAGGCTGCAAAAGTGTTGCAGCAGCAGATTCTGAAAATAAATGCATCTGGG
AGGCTGGACAACCGATTAAACACAAATGACTGTTTGACTAATAATCCCCTCCCGCCTCAA
AATTCTCTAGACAGTAGCGGTGCATCCAGTTGTATTTCCAGTGTTACCCTCTCAGAAGTA
ATGTCAACTTCTTCACAGCCTAATCTAATGTCAGATTCAGGATTTCCATTCAACTCTTGT
TCATCCATCATATCTGAGACCCAATCATCCACTACTGTGGTTCCTGGGGAGGCCAACATT
CCCGTATTACCTGAAGCTGATGCATTGAACTCTCAGGCAGTCCATGATTTGCCTGAATTT
TCTCATATTCTTGGAGTAACTGACCTTGACCTTAATATGTCTGAGACTGGAAATGTGCCA
GATATTGACACAGCGCAAGGTATTTTGGATGGTTTAACAACAATTGTCTCTGATGAATTT
TCAGCAAACACAGATGGTGATGTTTTGCTGGATGACATGCCTAAGCTTCCAGCGATTAAT
GATATTTTCTGGGACCAGATTCTCTCTGCAACCCCTGCAAGCCCTCTCACTGGGGATACG
GATGAGATTGGTTCCCTAGTCGTGGAAGAGGATTTCCTAGGAGTTCAGGAGAGTGATTGG
GATAAACTAAAGCATATGCATCATCTTACTGAACAGATGGGGCTACTTTCATCAGTTGCC
CAGATTTGATGATTTCATGTTTTTTTTAAACGCTTGCAATGATGCAGGGTGTTCTGCGTT
AGTGATACCACCTTGAGCACAACTGCTGAAGTGTGGTGAACTTCTAGAGGGTGTAAAGCA
ATGAACTTCTCCCCATGTGGTAATATTTTTTTGTCAGGTGGATGCTCTGAACTGGTGCGC
ATTAACAATCTTGTCTTGAAAGACTTTCTTCACTACTAATAATGATGTTCTGTGTAGTTA
AAAAGGGGATCCCCAAAAGACTAGTTTGGTGTATTTTATTCCGGCTTTTTGTATGTACAT
TTATCTGGCACAATGGGTTAGTTAAAAAAGAACACTAAAATGTTCTTTACTTATTAAGAA
ATTGAAATAGGGATGCAAAGAAGTTGCTGCAGAGGATCTGTATGTACCTTTTATTGTTTA
CATAATGATGATTTCAACGAAGATGCAAGCAGGATGAATGAACGTCTTGTTTTTTGTCCA
AATGTATTGTATGTTTTTGTTCTATTCCGAGACTTGTATTCAATGCAGCAGTTGTTTAAA
GCACCTTCTCC
