Microarray Probes on PGSC0003DMT400007377
Probe ID | Chip | Probe Sequence |
---|
CUST_11209_PI426222305 |
JHI_St_60k_v1 |
GGTCAAACGTGTCTTTCAGAGTTCAACTTTGAAAAAAGTGAAAAGATTTCACAACCAAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400007377
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400007377 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G01470.1 |
+3 |
2e-33 |
131 |
62/91 (68%) |
homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272 |
Transcript Sequence (2512 bp)
>PGSC0003DMT400007377 2512 pgsc_dm_v3.4
TCTTCTTACCCTCAAAAAATCTCCCTTCCATATTTTCCTCTATATTTTCTCTTTCTCTAT
GCTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTTTCAATATTAATTGTGATCC
TCATTTATAGTACTTATCACAACTTTCTTACTAACAATTCAATAGTCCAATTTTTCACTT
CTTGATTCTCCTCTAAACTCCTAGTACCAAAAAAATTTAGAAGATAGTATGGAGGTAGCA
AGAGTTTATGAAGGTTCTAACAATTGCTTTATACCTCCAAATGAAATTCTTCCTCCTACT
TCTAATTGGGTATCTAACTCTTCCTCCATTTTCCATGGTAAGGTTCCTTCGCCGAAAAAT
TATATTATTTATACATGGTAAAAATTGAGTACTTTTTATGTATGTATAGTAGTTCTCAAC
CCCTTTCAGCTAGTTCGTGTGTTTATTTTTTCATATTTTGAACTGAGTTAGTGAAAATTC
TGATTTCGTCACTGATGTGTGGGGTGATCCTTTGATGATTAAGAGATTATAGCCTAAAGT
TGTAAATATTGACAAGGAAATGATGGAATTTTCTGTTTAATTTAGCTGCCTTGTTATTAT
CCTACTTGTGTTTTTTTTTTCAAGAAAAAAATAACAAATCTTATGTACATATGTAGTTGG
CTTTGTTTTCTCATGTTAATATAAAAAGCTTATTAGCTCAATTGACGGACTATTTGACTA
TCTGAGCTTTCACCTCGTTATTAGTGAATGTTCGATTTTCCACCTCGTGATCTCGTCATG
CATTTGTGAAATTGAAATGAACCAATATTTGTTTCCTTCATTGCTCTGTTTCAGGCTCTG
TATCCATGGTAAATTTCGACCAAGATCAAGTACAAAAGTCTAAAATGAGGTCATTTTTAG
TACAACTTGATCAAGACGATAATAACAGCAACGATGACAATTACAATTATCACCAAAGTG
AAAAGAAGAGACGATTGTTACCAAAGCAAGTTGAGTTTCTTGAGAAAAGTTTCGAGGTAG
AAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTA
GGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGA
AGAATTATGATGTCCTTAAAGCTAGCTTTGATAAACTAAAGACTCAATATGATTGTCTCT
TCAAAGAGAATGAGAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATT
ATTTGAATATATGATCATATTTCAACTTAATTTTTTGAAAATATTGAGATCATGAGTTAA
AATGATACTTATTAGAAGGGTACAAAGGTAGATTTTGAGAGTAGTTTTTGAAAATTTATG
TTTAGGATATCTGTTTGGCCGTGAAATTTGATCAGACTTTGAAAATGTGATTGGGAGTTC
TACTCACAAAATTCAATTTTGTCCAAGTAAATGCATATCCTAACTCCTAACACAACTTCA
GAAACCACAATTTGTGCGTGTTTGACCATGTTTTAATGATTTTGGTCAAACGTGTCTTTC
AGAGTTCAACTTTGAAAAAAGTGAAAAGATTTCACAACCAAACTTCTTAAATTTCTAAAA
ATCACGAAATTTGATCTAGGTCTTCCCTTTTTTTTCCCTTTTGTGTTCAATAGGTACATT
TACTCAAAGATAAGTTGATCAACAGCGTAAAAGGGAAGGAAACTTCAGAACCTATTAATC
CACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGCTTCAAATTTAGCAATGG
TGGTGTGCAAGCAAGAAGATACAAAAAGTGATGTTCTTGATTCAGACAGCCCGCGTTTTA
CTGACGGCGATTACACTTCATTTTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAG
AACACTCTGATTTTTCTCAAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAAGATC
ATCATCATGATGATTTACCTGTTAATTCTTGTCATTTGGGTTTTCAAATTGAGGATCAAT
CTTGGTTCTCACATTATTGAGTTTTCACTTCAAGATCATATAAAGGGAAATGAAGCCTTT
GTGCTACATTTCCTTTTTTAATTTACACCAATAATATGTTGTATGTATTGTATAGGTCCA
TTTGGAATGAGATGAAGATCTTTGTTGAACCATTCAGTGTCCACATTGCAGGGTTAATTC
AGGGGTGATGCTCTCAACAGGGTTTTCTCGATACCTCATAAATGATAGATTGATATTTTA
TACACCCTTAACTCTTTTATGGACCAGGTTAAGCTATGTGTTTTACTATAATAACTTAGT
TGAAATCAATGCAAATAATAATAAGAACACAATATTTTTACGTGAAAACATCCAACTCAT
AAGGGTGGAAAAAAATCACGACCTACATCTTTGTAGGATTTCTCCTAATCTTTACTGATT
AATGAGCTTCGACAGAATTTAGATTACCACACTTGCAATCTCGGAACTGACT