Microarray Probes on PGSC0003DMT400006360
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_9173_PI426222305 |
JHI_St_60k_v1 |
GTCCATAACCTGGCATGGTTGTTTTCTATTTAATGCTTTAAATACCTCAATCCAAAGAGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400006360
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400006360 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G72830.2 |
+3 |
4e-38 |
141 |
89/188 (47%) |
nuclear factor Y, subunit A3 | chr1:27405699-27407088 REVERSE LENGTH=341 |
Transcript Sequence (1114 bp)
>PGSC0003DMT400006360 1114 pgsc_dm_v3.4
TTTCTTCCGAAAGGATTCTGAGCTGAGTTAGTAACTTAACCCCATTTTGTTAGTGTTAAT
GATCATCACTCAATTCTGTAGATTTACAGATGCAACAAATGTCGACATTTCCTGGTCCTC
AGAATTCCAAGGAATTGAATTATCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAA
CGAGTCAATCATGTCCTGAAGCTGCTAATGAAGGAGAAAGAAAAAGCCACGGGAAAAGCA
GTATGCCTTTGCGAGCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTG
TGTCAAGTCAGGAGCATGGTTGGACTTTCGATATGTATCAGAAAAATTTTGCTGTTGTTC
CTTTTCCTCATCCGGATCCTTACTATCACGGTCTAGTTGCTGCCTATGGAAATCAAGCCA
TGGTTCAATCCCAAATGTTAGGCATGGTTTCTCCTCGCGTGCCACTTCCGCTCGACCTTA
AGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATCCTCAGGCGTAGAC
AGTACCGTGCTAGGCTGGAGGCTCAAAACAAACTCTCTAAAGGACGGAAGCCATATCTCC
ATGAGTCCCGGCATCGTCATGCATTGAATAGGGCTAGGGGACCCGGTGGGCGCTTTGTCA
ATATGAAGAAGCCTCGAGAGTCCAAATCCCCTGATTTGATCAATGGTCAAGACAATCAGG
TATCTGATGAGCTGCAACTCAACAGAAAAATGTTGGAGCCCAATATTCATCAATCCAGAA
GCTACTCCACACCAGTATACTCTGGAATCACTAGTGGCTCGAACGGTGATGCTATTTACC
ATCACCAATCATTTAAGTACTCCGCCTTCTCAGCGCGTAACAGAGGGACCTCACAGCTGG
ACAAAGAGAAGAAAGATAACACGAGCAATCCATGTTTATCATCTTTTTGATGCAAGTGTT
GCTATTAAAAGTGGGAAGTCATCCTTGGCTATGTTAGTATTGTAGTACATTATTCTGAAA
ACTTTATAGTTAGTCCATAACCTGGCATGGTTGTTTTCTATTTAATGCTTTAAATACCTC
AATCCAAAGAGTAATTTTTAGTTTATTGTGGCTG
