Microarray Probes on PGSC0003DMT400005471

Probe IDChipProbe Sequence
CUST_472_PI426222305 JHI_St_60k_v1 CAGTCCTGTTGTTGAAACTGATGATGTTGTGTACTCAATGTGAATACTAATAAGTAATCC

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400005471

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Source Transcript PGSC0003DMT400005471 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc04g074830.1 +1 0.0 608 317/338 (94%) evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch04 gene_region:58341226-58342242 transcript_region:SL2.50ch04:58341226..58342242+ go_terms:GO:0005488 functional_description:At4g40080-like protein (Fragment) (AHRD V1 ***- B3SK93_ARALY); contains Interpro domain(s) IPR013809 Epsin-like, N-terminal
TAIR PP10 AT4G40080.1 +1 7e-48 171 114/292 (39%) ENTH/ANTH/VHS superfamily protein | chr4:18579371-18580542 FORWARD LENGTH=365

Transcript Sequence (1389 bp)

>PGSC0003DMT400005471 1389 pgsc_dm_v3.4
TTTCTCTATTTCTTCCACAAAATTTCATTTTTTCTATCTCTAAAACCCTCCTGAAAAAGG
GGGCAAAAAACCTCCAAAACTATGAGCAAAAAAAGAATACTCAGGGACATTATCGGTATT
TTCAAAGACAAAGCTTCCCTTCTCAAAGCCAACTTATCAACAAAACGCGGCGTTTCATCA
ATTCAAGTCACCGTTATACGCGCCACCACACACGCCTCCACATCTCCGCCGCGGAACCAC
TTCATCGCCGCCATCATCTCCGCCGGTGACCACTCCCTCCCCGCCATTTACGCATGTATC
GATGCGATCATGGACCGCCTTCATAGTACCCAAAATCCGTACGTTGCCTTAAAATGTCTA
TTCATTTTTCATAACATTATGGCTAAAGGTTCACTATTATACAAAGATCATGTATCCTTT
TTTCCAGCCTCCGGTGGTCATAATTCGTTAAATCTTTCGGGGTTTTACGATAAATTCGAC
GTTGAAACGCGACAACTATCGTCGTGGGTTCGATGGTACGCTAATGTCCTTGAACGTAAC
ATGATTACGTCTAGGACATTGGGTTCATATATTTCTCCTTCGTCAAGATTATCGACAAAT
TTCGATAAAATTGAGAATCATAAGGGAAATAATATTAGTTTTTCTAATTCCGTTACGGAA
ATGGAATCATTGGTGTGTTTGGTGGAAGTAATTTGTGAAGCGCCCGAGTCACAATATTGT
CAAAAAATTGACTTAGTCCATGAAATTATGATATTAATTTCGGAGGATTATCGATCGACG
CAGTACCATATATTGATACGACTCGTTGAGTTATCAAGCCGAGTTTCGAGATTGAGTTAC
CTTGATTTGTCTGAGTTGATTTTGTGTTTGTCAAGGCTAGAGGGATGTAGGAAAAAGTTG
AATGAATTGTTTATACGACGAAAAAATGATTTATTTTGGGAAATGGTAAGTCAAAAGAAA
ATGGATATGGAGAAGGTGAAATATGAAAGGGAAAAACAAGGTTTATTACTATGGAATGTT
GATGAGAATTGTGATGAGTTAAATTGGTCATCACAAAGATTTGGAGGAAAAATTCAACAA
TTTTTGGTTGCTGCTTCATAAAGTCAATTGGTGACATTTGATTTTTGGGCTTTAGCTTTT
GTCTAGAGGCCTGGGCTGGACTGTAGTCACTGTGGGCCAGAAGCCTAATTTGGGCTGTTT
GCAATTGGAAGCCTATTTGAATAGTTTTGAATATGGTTTTCATATGTGAAAAGGCCTCAT
TTTTGTGTGTAGAAATTGCAGTCCTGTTGTTGAAACTGATGATGTTGTGTACTCAATGTG
AATACTAATAAGTAATCCTACTATTTCTTGTTCCAAAATAATTTGCTAGCTTTTTGTTTC
AAATTTAAG