Microarray Probes on PGSC0003DMT400005471
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_472_PI426222305 |
JHI_St_60k_v1 |
CAGTCCTGTTGTTGAAACTGATGATGTTGTGTACTCAATGTGAATACTAATAAGTAATCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400005471
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400005471 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc04g074830.1 |
+1 |
0.0 |
608 |
317/338 (94%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch04 gene_region:58341226-58342242 transcript_region:SL2.50ch04:58341226..58342242+ go_terms:GO:0005488 functional_description:At4g40080-like protein (Fragment) (AHRD V1 ***- B3SK93_ARALY); contains Interpro domain(s) IPR013809 Epsin-like, N-terminal |
| TAIR PP10 |
AT4G40080.1 |
+1 |
7e-48 |
171 |
114/292 (39%) |
ENTH/ANTH/VHS superfamily protein | chr4:18579371-18580542 FORWARD LENGTH=365 |
Transcript Sequence (1389 bp)
>PGSC0003DMT400005471 1389 pgsc_dm_v3.4
TTTCTCTATTTCTTCCACAAAATTTCATTTTTTCTATCTCTAAAACCCTCCTGAAAAAGG
GGGCAAAAAACCTCCAAAACTATGAGCAAAAAAAGAATACTCAGGGACATTATCGGTATT
TTCAAAGACAAAGCTTCCCTTCTCAAAGCCAACTTATCAACAAAACGCGGCGTTTCATCA
ATTCAAGTCACCGTTATACGCGCCACCACACACGCCTCCACATCTCCGCCGCGGAACCAC
TTCATCGCCGCCATCATCTCCGCCGGTGACCACTCCCTCCCCGCCATTTACGCATGTATC
GATGCGATCATGGACCGCCTTCATAGTACCCAAAATCCGTACGTTGCCTTAAAATGTCTA
TTCATTTTTCATAACATTATGGCTAAAGGTTCACTATTATACAAAGATCATGTATCCTTT
TTTCCAGCCTCCGGTGGTCATAATTCGTTAAATCTTTCGGGGTTTTACGATAAATTCGAC
GTTGAAACGCGACAACTATCGTCGTGGGTTCGATGGTACGCTAATGTCCTTGAACGTAAC
ATGATTACGTCTAGGACATTGGGTTCATATATTTCTCCTTCGTCAAGATTATCGACAAAT
TTCGATAAAATTGAGAATCATAAGGGAAATAATATTAGTTTTTCTAATTCCGTTACGGAA
ATGGAATCATTGGTGTGTTTGGTGGAAGTAATTTGTGAAGCGCCCGAGTCACAATATTGT
CAAAAAATTGACTTAGTCCATGAAATTATGATATTAATTTCGGAGGATTATCGATCGACG
CAGTACCATATATTGATACGACTCGTTGAGTTATCAAGCCGAGTTTCGAGATTGAGTTAC
CTTGATTTGTCTGAGTTGATTTTGTGTTTGTCAAGGCTAGAGGGATGTAGGAAAAAGTTG
AATGAATTGTTTATACGACGAAAAAATGATTTATTTTGGGAAATGGTAAGTCAAAAGAAA
ATGGATATGGAGAAGGTGAAATATGAAAGGGAAAAACAAGGTTTATTACTATGGAATGTT
GATGAGAATTGTGATGAGTTAAATTGGTCATCACAAAGATTTGGAGGAAAAATTCAACAA
TTTTTGGTTGCTGCTTCATAAAGTCAATTGGTGACATTTGATTTTTGGGCTTTAGCTTTT
GTCTAGAGGCCTGGGCTGGACTGTAGTCACTGTGGGCCAGAAGCCTAATTTGGGCTGTTT
GCAATTGGAAGCCTATTTGAATAGTTTTGAATATGGTTTTCATATGTGAAAAGGCCTCAT
TTTTGTGTGTAGAAATTGCAGTCCTGTTGTTGAAACTGATGATGTTGTGTACTCAATGTG
AATACTAATAAGTAATCCTACTATTTCTTGTTCCAAAATAATTTGCTAGCTTTTTGTTTC
AAATTTAAG
