Microarray Probes on PGSC0003DMT400003712
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1202_PI426222305 |
JHI_St_60k_v1 |
TGGCTTCTCAGGGAAGTGGTTCTTCAGGAATTTCTGATTTTGGGAGTCAACCTATTCAAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003712
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400003712 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088910.2 |
+2 |
5e-171 |
490 |
296/321 (92%) |
genomic_reference:SL2.50ch02 gene_region:45411058-45413952 transcript_region:SL2.50ch02:45411058..45413952- go_terms:GO:0005515 functional_description:Ninja-family protein 3 (AHRD V1 ***- NNJA3_WHEAT); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 |
| TAIR PP10 |
AT3G29575.1 |
+2 |
2e-54 |
186 |
117/260 (45%) |
ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231 |
Transcript Sequence (1614 bp)
>PGSC0003DMT400003712 1614 pgsc_dm_v3.4
TATAATTTTTTTCTTTATATGGCTCAAGTTAACTCTTTTGCCGGCGAATTTTGGAACTCC
GGCAACTACATTCTCTAACGTACACAGAATTTTCTGTTTCTTATAATTTAAAAAGTTGGT
TTGAAGTTTTGGGTTTTTGTTGTTTGTTTAAATGGCTGAAGCTGAAGAAAATAGAGAAAA
GAGGTGTTTTTCTAGTATGCAGATGGATATTTTTTCGAGAGATCTGTTGCATAAATTTAT
GAATGGAAACAACAACAAATTTCATGAAATTCCTAATGAGGAAGATGATTTGGAGCTGAG
TTTGGGGCTTTCATTGAATGGAAGATTTGGGGTAGACCCTGAAAGGGCTAAGAGACTTAA
ACGCTCTTCTTCAATTTCTAACTTTGTGTTTTCCGGCGGGGATGAGAGTAATGGCCGTTG
TTCATTCTCTGTTGGTCCGATTACGAGGACGTGTTCGTTGCCTGTTGAGGGTGAGGAGGA
GTGCAGAAAAAGGAAGGAGTTGCAATCTCTGAGGCGTTTGGAGGCTAAAAGGAAGAGAAT
GGAGAAATTACAGAATGTTAGAGTGGTGAAGGATAAGGTTGATTTAGACGAACGTCCTGA
AGAAAATGGTGGTCCAGGTGGGAATTCATTGCCTGTGTCACAAGGGTCTATGGCTTCTCA
GGGAAGTGGTTCTTCAGGAATTTCTGATTTTGGGAGTCAACCTATTCAAGGGCCAGGTGA
CAACAGTACTGGGGCAAATACTCCGGCTAGCATCAAGCCTTCAGAGCATGAACGGAAACA
GGTAGCTAAACCACCTAAAATCACAAGCGAAAAACCAGCTAGCACATGTAATGGAAATGC
TAGCAAGGAAGCAAAAGAAATGTTCAAAAACTACATGCTCAACATGCCTTGTGTTTCCAC
AATGGGCAATGGGCCAAATGGTAAGAAGATCGAAGGATTTCTGTATAGATATCAGAAGGG
AGAGGAAGTGAAAATAATGTGCGTTTGTCATGGCAACTTTCTGTCGCCAGCTGAGTTTGT
GAAGCATGCTGGTGGCGGTGATGTTGCGAATCCGTTGAAGCAAATTGTCGTCAATCCTTC
ACCTCTATTGAGATGATGCCAGCGGAATTCTATAATGGCGCTTGACACAGAAAAGGGGCA
AAGCTTCAAGAATTCAGCTTTGTTATCATCGTTCATCTTCTTTTGTAACATGGACCAAGG
TTCTTTTTTATTTTTCACTAGATATTAGTTTTTTGCGGAATATTGCATAATCAATGGGCA
AGTTTATCCCCTTTCTGTGGGGAAAAAAATTCAAGAATTCCCATTGGCATTTATCTTTCA
GTTATTCGTTATTTTGGAAGTCCTCCTGTACATGAAGGACTGTACAGTGCAGTTGGTTCC
GTGCTCATTAATTCAATCAATTTCAACATAAAATGTGGCTTTTGAAGGGGGTAATATCAG
CATAGTCTAACAAGCTTGCCCAGCTTCTGCTCTTAACTGATGCAGTTTCATGGTCCATGC
GGCCCTTGTTTATAACGATAACATTAGTAATTCCATGTAAAATATATTAGTCAACAATGA
TTTTTGTTCAGCTTTTCTTTTTATTTTTCAATGGAAGTCGGATGTATTCTTTTT
