Microarray Probes on PGSC0003DMT400003637
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1472_PI426222305 |
JHI_St_60k_v1 |
ATTGTTCATGATTCCCTCTGGTTTGAGTCCTTCTGGATTCCTTAATTCTCCTGGCTTTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003637
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400003637 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088340.2 |
+1 |
0.0 |
835 |
427/460 (93%) |
genomic_reference:SL2.50ch02 gene_region:45045827-45048579 transcript_region:SL2.50ch02:45045827..45048579- go_terms:GO:0005515,GO:0003700 functional_description:WRKY transcription factor-c (AHRD V1 **** Q5DJV3_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY |
| TAIR PP10 |
AT2G03340.1 |
+1 |
3e-105 |
330 |
211/483 (44%) |
WRKY DNA-binding protein 3 | chr2:1014724-1016936 REVERSE LENGTH=513 |
Transcript Sequence (1785 bp)
>PGSC0003DMT400003637 1785 pgsc_dm_v3.4
GAAAAGCAACTCCACTTTCTTCTCTTTTTTTTTCTCTTGAGAAGAAGAAGAAGACTGAAA
ATGGGGGAAACAGGGGAAGCTTCAGCAATATCGTTTCCATCTTTAACAATTCCACCTCGC
CCTTCATTCGAATCCTTTTTTAACATGTCTTCTTTCAGCCCAGGTCCAATGTCTCTTGTT
TCCAGTTTCTTATCTGATCAGAGCCCTGATTCTGCAGATTGTCCTCCTTCTTTCTCCCAG
CTTCTCGCCGGATACGAATATTCTGGAGATCTTGCAGGGTGTCAAAACAACTCTGTGTAT
AACCCTGTGAATCCTCAATTGTTCATGATTCCCTCTGGTTTGAGTCCTTCTGGATTCCTT
AATTCTCCTGGCTTTCTTTCCCCACTTCAGAGTCCCTTTGGAATGTCACATCAGCAGGCT
CTAGCACATGTTACAGCACAGGCTGAATTTTCTAGTTCATATATGCAAGCCGAAGATCAG
TGTTCCTCTCAGGTGGCTTCAGTAGAAGCATTAGGACATGAGTTGTCGATTGATCCAAAT
GAGTTTTCTTTGCAGATAAAGGAATGTCTGCGAACTAGTTTGGATAACAAACCATCAGAC
AATCAGGGTAAGCAATTTGAACAACCGGAGGTTTCTCAATCTGAGAACAAGACCTCCTTT
GGTGCTCTCGATAAGCCAGCTTGTGATGGTTATAACTGGAGAAAATATGGCCAGAAAAAG
GTTAAAGCTAGTGAATGCCCTAGGAGCTACTATAAGTGCACACATCTCAAATGTCTAGTG
AAGAAGAAGGTTGAGCGGTCTGTTGATGGTCACATAACTGAGATAACATATAATGGCCGG
CACAACCATGATCAACCAACCAAACAAAGAAAAAATGGTTCTGCTTTGGATAATACAGAC
TGCTTTGGAGTTCGACCAGATATTAGTACACATGATTGGACAGTAATGAATAGCTCGGAT
GGGTATTCTCCGTCTCGTTCTGACCAGGTTCCAACCCAAATGGCATCTGAACTTCTTGTC
AAAAGAGAATGTGATGAAACCGAAAGCTATTTGATAGACGTAGATGATGAAGGGCATGAT
GAACCAGATGCAAAGAGAATGAAGACGGCAGTTATGCCTGTAGCTTCATCACATGTTACA
GTAGCTGAATCCAAGATTGTTCTGCAGACGAGAAGTGAAGTTGATTTCTTAGATGACGGG
TACAAATGGCGAAAATATGGGCAGAAGGTGGTAAAGGGGACTCAGCATCCAAGGAGTTAC
TATCGGTGCACATATCCTGGATGCAATGTCCGCAAACAAGTCGAGAGGGCTTCAACTGAT
CCAAAAGCTGTCATAACAACATATGACGGCAAGCATAATCATGATATTCCTACTGTTAGG
AATAGAGGAACGAGGAATAAATACAGCCAAAGATAGCATTGAAAACGTAAGAAACTGTGA
CATGAAGGCCTTCAGTTCACAAAAATATCTTGGTTTCCGAAAACAACGAAATTCCCTTGT
GTGAAAAGATTGCAGCATTAGGAAAAGTAGATGTGGTTTGAGCTTCTTACTTCTGTACAA
AAAGCTTATAATTAATAAATCTATCCTTGTTGAAAACCACATGCTTGGTCCCTTGAATTT
GTTGGTTGGTCTCAAGAAATATTTGTAAATTCTATTGCTAGTTTCTAAGATGTCTAATAA
AGCAACGAAAAAAAAGAAAAGGTGTAATAGTTTGTCCTTGTCGTTGAAGCTTCCTGGGCC
AGGCTTCAAACTCTAGTCCAGAAGAATAAAGGAGCTTATTCAAGC
