Microarray Probes on PGSC0003DMT400003636
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1373_PI426222305 |
JHI_St_60k_v1 |
GATGTGTCCTGTTGTTTTGTTAGATGACATGAATAATCCGCTTATGCATCTAAACTTGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003636
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400003636 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088340.2 |
+2 |
9e-28 |
109 |
51/54 (94%) |
genomic_reference:SL2.50ch02 gene_region:45045827-45048579 transcript_region:SL2.50ch02:45045827..45048579- go_terms:GO:0005515,GO:0003700 functional_description:WRKY transcription factor-c (AHRD V1 **** Q5DJV3_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY |
| TAIR PP10 |
AT3G01080.1 |
+2 |
2e-17 |
80 |
34/44 (77%) |
WRKY DNA-binding protein 58 | chr3:25507-27449 FORWARD LENGTH=423 |
Transcript Sequence (616 bp)
>PGSC0003DMT400003636 616 pgsc_dm_v3.4
ATATGTTTTCACATGTGTGATGTGTCCTGTTGTTTTGTTAGATGACATGAATAATCCGCT
TATGCATCTAAACTTGATATACAGGAGTTACTATCGGTGCACATATCCTGGATGCAATGT
CCGCAAACAAGTCGAGAGGGCTTCAACTGATCCAAAAGCTGTCATAACAACATATGACGG
CAAGCATAATCATGATATTCCTACTGTTAGGAATAGAGGAACGAGGAATAAATACAGCCA
AAGATAGCATTGAAAACGTAAGAAACTGTGACATGAAGGCCTTCAGTTCACAAAAATATC
TTGGTTTCCGAAAACAACGAAATTCCCTTGTGTGAAAAGATTGCAGCATTAGGAAAAGTA
GATGTGGTTTGAGCTTCTTACTTCTGTACAAAAAGCTTATAATTAATAAATCTATCCTTG
TTGAAAACCACATGCTTGGTCCCTTGAATTTGTTGGTTGGTCTCAAGAAATATTTGTAAA
TTCTATTGCTAGTTTCTAAGATGTCTAATAAAGCAACGAAAAAAAAGAAAAGGTGTAATA
GTTTGTCCTTGTCGTTGAAGCTTCCTGGGCCAGGCTTCAAACTCTAGTCCAGAAGAATAA
AGGAGCTTATTCAAGC
