Microarray Probes on PGSC0003DMT400003364
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1070_PI426222305 |
JHI_St_60k_v1 |
CCTTCGATGAAAATGGTGATGGAAGAATCGATTTCGAGGAATTTGTCAAAATGTTGTAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003364
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400003364 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088090.1 |
+1 |
1e-117 |
340 |
173/188 (92%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch02 gene_region:44857193-44857738 transcript_region:SL2.50ch02:44857193..44857738+ go_terms:GO:0005509 functional_description:Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type |
| TAIR PP10 |
AT5G39670.1 |
+1 |
1e-28 |
110 |
70/163 (43%) |
Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204 |
Transcript Sequence (938 bp)
>PGSC0003DMT400003364 938 pgsc_dm_v3.4
CTTTTCCCACGAACTCCTCAATTGCACCTACTAAGCACTTTCCTCCATCTTCAAACTTTC
AACTCTTATATATAAAATCCCTAATACCTTTCATAATTCTCATTAAAACCAAAACAAATA
ACACTCTGTTTTCCTCTGCATGCAAGAATATCACCCACCTTTTACTACAACAACAACAAA
GAGATATTTCTCTTCTTCGCCATCGCAATCAAGAATTTTAATTTTAACTTACAAATCTTA
AACATGGCAGCTTCTAATTATTTGAATCGCTTTCCATTCAAGAAATTCCCTGTAACTACC
ATTCCAATTCCCCTGCTAATTCATGGCGCGGTGGGATTCTTCTTTCTGTATATAATCTTT
GATTGTGCACGAAGACTTTTTACCTTTTTGTCCTTTGCTGAATCCCAAGTGTGTGAAAAG
AACAAGACTCCCAAAAAACTGAAATCTATTAGCGAGAAATTAGTTGATGGAAGCTTAAAC
AGGGAAGAGGTGGAAATGGTTATGGCTAATTTAGGTATTTTTGCCAATCCTCAAGGTGTG
AAGATTCAGGGGAGGTTGGATTCTAATGACATTTTTGAACTTTTCGGAGAGGAATTAGAA
GCTAAAGAGCAAGAAGTAAGAGAAGCTTTTGATGTTTTTGATGAGAACAAAGATGGATTT
ATCAACGAAAGGGATTTGCAGAGAGTTCTGTGTGCTCTGGGATTAAAGGGAGTTGCAGAA
TTGGATAATTGCAAGAAGATGATCATGGCCTTCGATGAAAATGGTGATGGAAGAATCGAT
TTCGAGGAATTTGTCAAAATGTTGTAATATTTTTGGTCAATGAAAAAATTGGATGAACAC
AAACATTTTGTAACATTCTTTAATTTGTTCGATTTACTCTTGCTTTCGATGATCGTCATT
TTTGCTCCATGTATATAATATTTTGGATTATAATCGTG
