Microarray Probes on PGSC0003DMT400003328
Probe ID | Chip | Probe Sequence |
---|
CUST_1506_PI426222305 |
JHI_St_60k_v1 |
ATCTGTTGTTTGCTGCTAGTGTTAAGATAGGAATCTATGAGTTGAAGAAAGGAGATTTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400003328
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Source Transcript PGSC0003DMT400003328 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) |
Solyc02g087800.2 |
+3 |
0.0 |
659 |
338/356 (95%) |
genomic_reference:SL2.50ch02 gene_region:44662024-44664509 transcript_region:SL2.50ch02:44662024..44664509+ go_terms:GO:0005515,GO:0004034 functional_description:Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase |
TAIR PP10 |
AT5G15140.1 |
+3 |
2e-125 |
377 |
183/330 (55%) |
Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490 |
Transcript Sequence (1333 bp)
>PGSC0003DMT400003328 1333 pgsc_dm_v3.4
CAGAACAGCTCTTTGTTCACATGCTTGCTAATATTCTAATACCACAAAAACAACAATACC
AGATGAATGAACAAGTATATAAATTGAAGGGCTGAAAAAAGCAGTCATTCAAACACTCTA
AAAAACAGAGATCCAAGATGAGTTTGTCTTCAAAGATTAATTTGTTCATCTGTTTGTTCA
TTTTTCATCTGTTGTTTGCTGCTAGTGTTAAGATAGGAATCTATGAGTTGAAGAAAGGAG
ATTTCTCAATTAAGATCACTGATTATGGTGCCACAATCATCTCTGTTCTTCTTCCTGATA
AGAATGGTAAAATAGACGATGTTGTTCTTGGATATGACACCATCAAAGAATATCTGAATG
ATACAAGTTATTTTGGAGCCACCCTTGGAAGAGTAGCTAACCGGATTGGTGGTGCTCAAT
TTACTTTGAATGGAACCCATTATAAGCTTGTTCCCAATGAAGGCAAAAACATGATACATG
GTGGCCCTAAAGGATTTAGCAAAGTTGTCTGGAAGGTGAGCAAGTACGTGCAAGATGGTC
CCAGTCCTTACATAACTCTAACCTACTTCAGTGCTGATGGCGAAGAAGGATTTCCTGGTG
CTGTTCTTGCCTCTGTTACCTTTGCATTGAAAGATCCTTACAAACTTAGTGTTGTATTTA
AGGCGAAAGCTCTGAACAAGGCTACTCCAATTAACCTGTCTCACCACCCTTACTGGAACA
TTGGTGGACACACCAGTGGCGATATCTTGTCCAACGTTATTCAAATCTTTGGATCACACA
TCACACTAGTTGATAAAGAACTCATTCCGACAGGGGAAATTGCCCCCGTCAAGAACACAC
CCTATGATTTCCTGAAACCGCATACAGTAGGGAGCAGGATCAACAAACTCCAAAATGGAT
ATGACATCAACTATGCACTCGACAGCACTGCAAAAATGAAACCCGTGGGGGTAGTTTATG
ATAAGAAGTCCGGAAGAATGATGAATGTAAAAGCATCTGCACCTGGTGTTCAATTCTACA
CTTCAAATTGGGATAAAAGTAAAAAAGGGAAAGGTGGATTTATGTATCCGCCTCATGCAG
CATTGGCTTTGGAAACTCTAGTATTTCCAGACGCTGTGAATCACCCTAATTTTCCATCGT
CAATTGTGAATCCGGGAGATAGATACGTCCATTCAGTGTTGTATACGTTCTCCATCAAAA
AATAATGAGAATGCTTTCATTTTTATTTGTTTCATCATCCTGCATTAATTGACATTTTTG
TCAAGGTTGTAGTGTTCTGTATGACTAATTAAACACCCGGCATTTGACTCAATAAAGGAT
AGTTTTGTTTTGC