Microarray Probes on PGSC0003DMT400002201
Probe ID | Chip | Probe Sequence |
---|
CUST_47084_PI426222305 |
JHI_St_60k_v1 |
GCTGAATTAACCATAGTACAAGCATAATAACACCTACACTCAATGTGCATCAAGACTTTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400002201
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400002201 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G62040.1 |
+1 |
3e-110 |
325 |
176/242 (73%) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:22975328-22976518 REVERSE LENGTH=249 |
Transcript Sequence (1036 bp)
>PGSC0003DMT400002201 1036 pgsc_dm_v3.4
AATCAAGGCAATTATATATATCATATACGTAATTTGTAACTTGTAGGTGCAGGAAGCTGC
TGTCGAGCTAGCTTCATTTCTTCAAGATTTTCATCAACCAGCAAGGTGAAGCTACTCTTG
AGAATGGAAAGCGTTGCAAGGTCCAACACTCTTAAGTATGAGTGTATGTTGTTTGATATG
GATGACACTTTGTATCCTCTTAGCTCAGGTGTCAACCTAGCTTGTCGCAAAAATATAGAA
GAATATATGTTGCATCACCTGAATATTGAAGAAAGTGAAGTGCCAAAAATGTGCTTGGAT
TTATACAGAGAATACGGCACAACAATGGCAGGCTTGAAGGAGCTGGGGTACGAATTTGAC
AACGACAAGTTTCATGAATATGTGCATGGAAGATTGCCATATGAGGTGCTAAAACCTGAT
CCACTACTAAGGAACCTCCTACTTTCCATGCCACAACGCAAAATTATATTTACAAATGGT
GATAAAGCACATGCAATTAGAGTTCTGAGCAAGTTGGGACTGGGAGATTGTTTTGAAGGT
ATTATATGCTTTGAAACTCTGAATCCTTCCTTAGAGGATAATGCTACTATTTTATGCAAG
CCTTCTCTCAAAGCAATGGAGGCTGCTATTCAGATTGCAAACCTTGATCCAAACAAAACT
ATTTTTTTCGACGATAGCGCTCGGAACATAGCAAGTGGTAAACAAGCTGGACTCCACACG
GTGGTTGTGGGTAGCTCAACTTTGGTAGCAGGGGCAGATCACGCCTTGAGGAGCATACAC
AACATAAGAGAAGCCCTTCCTCATATATGGGAAGAAGAAGGAGATTTACCGCAAAAAATT
ATCCAATCCAATGCTGCTGAATTAACCATAGTACAAGCATAATAACACCTACACTCAATG
TGCATCAAGACTTTAATTTGATGAATTTCAATAAAAAAAATCTACGTGAAATGAAATAAT
AAGTCATTATATATGTATCCAATAATAGTGTACGAGTTACATTTATAGCACTATATAATA
TAAGTCATTATATTTG