Microarray Probes on PGSC0003DMT400001662
Probe ID | Chip | Probe Sequence |
---|
CUST_45332_PI426222305 |
JHI_St_60k_v1 |
CCTGATCTTTCTGTGATCTGTACTTTGTGATATATTGTGGTCTTCTAGTATCTTACTAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001662
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001662 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G15790.1 |
+1 |
4e-25 |
105 |
55/83 (66%) |
methyl-CPG-binding domain 11 | chr3:5343209-5344386 FORWARD LENGTH=254 |
Transcript Sequence (1888 bp)
>PGSC0003DMT400001662 1888 pgsc_dm_v3.4
GTGATTTTCTCTTGTTTGTTCCTGTTGTTGATTGGAGAGTTGACTTTGGGAGGGAAATAG
AGAGTTGGTGATCTGTTTAACAAGCTAGATTAAGGCAACAAAGTTTAGTTTTTGGTTATG
TAACAGAAGCTGATTTTTGTTGTTGCAAAGGCTGGAGTTTCTTCTGAGCTTCTTGAAGAA
ATTTCTATTTTCTAGTCACTACAAGTTAAACATGAACTGTGGATGACAATATAGTGGAAT
ATGAGTGTAAATTTCATTTAGAAATAACTAGTAAACCAACCATACAAGAATTACAATATG
AATAATACTACGGTTTCTGTTCACTAAGCTTGAAATCTAAATAAGCTTATATGGTTCAAC
ACTTGACAACCACCATGACTTGCGCCATCTCAAAAGTTCGGAGGGAATTGTGAGGTACCA
AATGGGAAGTAATTAATAGTTCTCTTTCTTTTCGGTGTCTGTTTTCTGCTGTCTTTAATT
ATTCTCTTCACGAGCTAGATATCCGTATCCATGTTTGTGATATCGTTATTGATGAGTGAA
GAATTCTGTATAGTGTCCTACTTAGCTTGTTTGAGAAATCAGTATTTGAAAGCTCCTGGG
ATTGTATCCTTCAACAAGGGATAGTTAAGTATTTCTTGTGAGGCATAGTTGGACACCTTA
TATATTTTCCTCTTATCTGTTTATTTGCAGCTCATGCTGAAAAAGGGTGTTAGAGCAAAG
AAGAATGAGGTTGTATTTGTTGCTCCAACAGGAGAGGAGATAAGGAATAAGAGGCAGTTG
GAGAAGTACCTGAAAACACACGATGGAAATCCTGGTATGTCAGAATTTGATTGGACTACT
GGTGAGGCTCCAAGGAGATCAGCACGGATCAGTCAGAAGGTTAAGGCAATGCCACTTCCA
GCAGTGCTTGAGCCGGCAAAGAAGCGACAACGTACGTCTTATGCTACAAAAAAAGAAGAG
GAAATGGATATCGCAGATATAGAGAAGGAAAACATGGAATCTGCCATAGAAGAAAAGGAA
GGCTTGGAGAAGGAGGAGAATATAGTAGAAGTTGAAATGGAGGACAAGGGGGGTGAGATG
GGCGCTAATAAGGAAAATACAGAGCATAAAAAAGAAGAGGAAATGGCTGGTACAGAGGTT
TCAGATAGGAAAACTGAGGCCAGCAATGACATTCAGTTTGAGGATGGAGGAGATAAAATG
GCTGAAAATGTTACAGAGGAGACTATAGCAATTGATGCCGACTTCTGGAATGATTCCATG
GACAAGGACTATTTCAAGGGAGTGTTTGCAAATGCTGTAATTGGAGAAACAAATGGTGCT
GAAGCAGGAATAGAAGTCGGGGAGAAACCAGGATACGGGGAAAATCTAGAGTCCCAGATT
GATATAGACATTAGTGGAGCAGATAACATGAATCACGACATTCCAGATAAGGGTACACCA
GAAAGAAAAGTCGCAGGAGGAGAGACGTACAACATTCAGGACCCTGCATTTGTTGGAGAA
GCTAGTGGTTTCCGTGAAGAGCCTAATTCGGTGGAGGAGGAGAAAAATAAGAACAGGGCT
GGCCTGGTTATGGATAATTGCCAGATTAATCAGCCAGAGCGAGCACATACCCCACAACAT
CAATCTGTTGCCACCATTAGTTGTTGAGTGTAGCATCTAAAATAAATTAGGCCTTCGCCC
AGTGCATGTTTAATCCGTACTAGGACGATTATAATAGTTTGCTTAGTAGTTTAGGAATTA
GCGTTTTAGAGATCAACTTTCCTGATCTTTCTGTGATCTGTACTTTGTGATATATTGTGG
TCTTCTAGTATCTTACTAACATAAATAAATGTCAACTTGTTCATTGTGATCTTTCTTGTT
TATTGGTACTGCTGAAATTCAATATATA