Microarray Probes on PGSC0003DMT400001661
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45328_PI426222305 |
JHI_St_60k_v1 |
CCTGATCTTTCTGTGATCTGTACTTTGTGATATATTGTGGTCTTCTAGTATCTTACTAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001661
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001661 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G15790.1 |
+2 |
4e-31 |
121 |
67/105 (64%) |
methyl-CPG-binding domain 11 | chr3:5343209-5344386 FORWARD LENGTH=254 |
Transcript Sequence (1430 bp)
>PGSC0003DMT400001661 1430 pgsc_dm_v3.4
CACTTGTGCGACGTGTGATAAATCTGTTGCGTGTTTGAGGCGGTTTCCTATGAGTTGCGG
CGTCTTTTAAGTATATGTCAAGCAAGCTTCATAAATGGTTGTACTGATGCAAAAACAGAG
CTAAGTTGTAGTTTTTGAGTTTTGATATTTGGAGAAGACAATAATGGCAAGTAACAATAT
GGATCTTTCGCCTGTGGAGCTTCCTGCGGCGCCTCTGTCTTGGAAGAAACTGCTCATGCT
GAAAAAGGGTGTTAGAGCAAAGAAGAATGAGGTTGTATTTGTTGCTCCAACAGGAGAGGA
GATAAGGAATAAGAGGCAGTTGGAGAAGTACCTGAAAACACACGATGGAAATCCTGGTAT
GTCAGAATTTGATTGGACTACTGGTGAGGCTCCAAGGAGATCAGCACGGATCAGTCAGAA
GGTTAAGGCAATGCCACTTCCAGCAGTGCTTGAGCCGGCAAAGAAGCGACAACGTACGTC
TTATGCTACAAAAAAAGAAGAGGAAATGGATATCGCAGATATAGAGAAGGAAAACATGGA
ATCTGCCATAGAAGAAAAGGAAGGCTTGGAGAAGGAGGAGAATATAGTAGAAGTTGAAAT
GGAGGACAAGGGGGGTGAGATGGGCGCTAATAAGGAAAATACAGAGCATAAAAAAGAAGA
GGAAATGGCTGGTACAGAGGTTTCAGATAGGAAAACTGAGGCCAGCAATGACATTCAGTT
TGAGGATGGAGGAGATAAAATGGCTGAAAATGTTACAGAGGAGACTATAGCAATTGATGC
CGACTTCTGGAATGATTCCATGGACAAGGACTATTTCAAGGGAGTGTTTGCAAATGCTGT
AATTGGAGAAACAAATGGTGCTGAAGCAGGAATAGAAGTCGGGGAGAAACCAGGATACGG
GGAAAATCTAGAGTCCCAGATTGATATAGACATTAGTGGAGCAGATAACATGAATCACGA
CATTCCAGATAAGGGTACACCAGAAAGAAAAGTCGCAGGAGGAGAGACGTACAACATTCA
GGACCCTGCATTTGTTGGAGAAGCTAGTGGTTTCCGTGAAGAGCCTAATTCGGTGGAGGA
GGAGAAAAATAAGAACAGGGCTGGCCTGGTTATGGATAATTGCCAGATTAATCAGCCAGA
GCGAGCACATACCCCACAACATCAATCTGTTGCCACCATTAGTTGTTGAGTGTAGCATCT
AAAATAAATTAGGCCTTCGCCCAGTGCATGTTTAATCCGTACTAGGACGATTATAATAGT
TTGCTTAGTAGTTTAGGAATTAGCGTTTTAGAGATCAACTTTCCTGATCTTTCTGTGATC
TGTACTTTGTGATATATTGTGGTCTTCTAGTATCTTACTAACATAAATAAATGTCAACTT
GTTCATTGTGATCTTTCTTGTTTATTGGTACTGCTGAAATTCAATATATA
