Microarray Probes on PGSC0003DMT400001614
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45346_PI426222305 |
JHI_St_60k_v1 |
GGCCACAGTTTTAACAGAAGAAGGAGTATTTGATGAGTGATTTTGTCAAAATTTCTCTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001614
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001614 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G47620.1 |
+1 |
9e-43 |
161 |
152/309 (49%) |
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | chr3:17559004-17560473 FORWARD LENGTH=489 |
Transcript Sequence (1862 bp)
>PGSC0003DMT400001614 1862 pgsc_dm_v3.4
ATTCATTCAAAGAGAGAGAAAGAAACATACACAGACCCACAAAGAATTAAATATAGTGTC
TGTCACTATTTTCTCATAAAAAGAACTTGGCCTGCCTAGTGAGAAAAAAAAAGAGAAAGA
AGGGGCTCATTTTAATTTTTTTTAAGAGCGAGTTTTTAGTCATTACTACTTTGTGAACAT
GGATGGAGGAGGTGATGATCATCTCCACCAACACCACCAACACCATCACCAACACAATCA
CCGCCCTATCGCGACTTTTCCGTTCCAATTACTTGAGAAAAAAGAAGACGAAGCTTGTTC
CAGTTCATCCAACGCTGCAGCTGCTTATACTACTTCTCTTGCCATTTCAAACACAGATAA
TACTCATACAAATCCTAATAATACACCTCGATCAACAACTTCAACTCTTCAAATCTCAGC
TTCTGGTGCCGATACATCTAAAAAGCCGCCCCCAAAGCGAACCTCCACCAAAGACCGCCA
TACTAAGGTTTGTTGTATTTATCTCATCTAAAAGCTTAAACAGTTAGAATATTGAATTAA
TTACTTATTTATATTTTGTGTTGATAGGTTGATGGTCGTGGCAGACGTATCCGCATGCCT
GCGCTTTGTGCAGCTAGGGTTTTTCAGCTCACACGGGAACTCGGTCATAAATCCGATGGT
GAAACCATAGAGTGGCTACTTCAACAAGCGGAACCATCAGTAATCGCCGCTACAGGAACC
GGTACAATTCCAGCAAACTTCACGTCGCTTAATATTTCACTACGTAGCTCAGGCTCCAGC
ATGTCAGTACCTTCACAGCTACGATCTTCATATTTCAATCCGAATTTTTCGCTCTCACAA
CGACGAGGGCTATTTCCTCCGGGAATTGGATTGTCGACTGATACTTCAGCTACTACGTTG
TTGAATTTTCAGTCGGCGAATTTAAGCCCTAATATGCAGTTACAAACAAAGCCTGAATTG
CGTGACAATTCAATCGATTTAACGGAGTCGAGTCCGGCGGAGGATAATTTAAGTAGGAAA
CGAAGGTCAGATTTAGATTTGGAGCAGCAGCAGCATCAACAACAACAGCAAATGGGAAGC
TATTTGCTACAGTCGAGTACTGGTCCGATGCCAACAGGCCATTCTTCAATTCCGGCTAAT
TTTTGGATGGTGACGAATCCGATTCCTAGTAACCAAGTGATGGGAGGCGATCCGATTTGG
CCGTTTCAATCAGTAAGCAATTCTGGTGCAGCAGCTGCTTTGTATAGAGGCACAATGCCA
AGTGGATTGCAATTTATGAATTTTCCCACTCCAGTTGCGCTTTTGCCTAGTCAGCAACTA
GGCGGCGGCAGTAGCGGTGGCGGCGGTAATAATGGATTGGGAGAAGGTCAATTAGGCATG
TTTGCCGGACTAAATCCGTATAGAGGTGGTGGCGGTGTATCGGAATCTCAGGCGAGTGGG
TCCCATTCGCATCACGGCGGTGGCACGGATGATCGGCACGATACAACGAGCCATCATTCA
TAGCTATAGACTGCTGATTGATTGATCATCAAATTCATCCATTCTTTCCCAACTTGTGTT
TTGTAAGTTTGGATGTTTAAAGTTCCTTATATTTTTCTTTTTTGTTGTTAAATTTGTTCT
GAACATTCTTTTTTCTTTCTTCACCTTTTTTATCGTGTGATTAATTTGCCTTACGAGTTT
GAAGAGGCCACAGTTTTAACAGAAGAAGGAGTATTTGATGAGTGATTTTGTCAAAATTTC
TCTGAATTGTTTTTCCAATTTTAGAGTCGTTTGCTATTCATCATCATTTGATTGTTCTTT
TTTATCTTTCTTCTAAAGTTACATGTACAAACATTATTACAGTAAGTTAATTTGTTCTGG
AT
