Microarray Probes on PGSC0003DMT400001611
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45317_PI426222305 |
JHI_St_60k_v1 |
AGAGGATTCCTCTTCGGAGAATATATGCAGTTGAGAATCAAAAACATGACTCATCCACCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001611
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001611 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G19000.1 |
+1 |
3e-42 |
152 |
103/314 (33%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6553668-6554987 REVERSE LENGTH=352 |
Transcript Sequence (1047 bp)
>PGSC0003DMT400001611 1047 pgsc_dm_v3.4
GAGAAAATTAAGGAAGACATGATAGCTAGTTTTGATATTCCAACAATTGATGTTTCTCCG
TTTTATAGATCAGAGGGAAATGAAGAAGGGAAAAAGAAGGCTTTTGAGCAAATGAAAGAA
GCTTGTATTAACTATGGTTTCTTCCAGATTGCGAATCACGAAATTCCTTTGGAGTTGTTG
AGCAGAACGATGGATATGTATAAGACTTTTTTTGCTTCTTCAGATGAAGAAAAACTGTTG
GTACCTAATAATTATTTCAAAAGCACACAGAATCCAGCTGAGACTTATGAGCATTTTGTG
TTTCGTCTTTCATCCTCTGTCGTCAATGTCTGCCCCAAAAATCCACCTCATTTCAAGGAA
TTATTGGAGGAGATGGCTTCGCATTTCAAAAAATTAGGAGTTGTGTTGGAAGGAATCATA
AGTGAGTGTGTGGGGCTCCCTCCTAACTTCCTAACAAACTATAAAAATGATGAGTCTCGG
GATACCTTGATCGGCCTCCACTACTTTCCAGCTACAGAAAACGACAACACAGGAAAAACT
GCACACGAAGATCCTGGCTGCTTCACCGTTGTCTACCAGGATGAAATCGGAGGCCTTGAG
GTGCACAAAGATGACCAGTGGATACCCATAGCGCCTTCCAAAGACAAACTAGTTGTTAAC
ATTGGAGATGTTATTCAGGTGCTAAGCAACAATAGATTCAAGAGTGCAACTCACAGAGTG
GTGAGACCAAGAGAAGCAAACCGTTACTCGTGCACTTTCTTCTATAACGTGCAAGGAGAC
AAGTGGGTTGAGCCATTACCACAGTTTACAGAGGAAATTGGAGAGTCGCCCAAGTACAGA
GGATTCCTCTTCGGAGAATATATGCAGTTGAGAATCAAAAACATGACTCATCCACCAGCT
AGACCTCAAGATCTCATCCATATAACACACTACTCAATTTCTATGTCATGAAATGTTTTC
TCTTTATATGGCAAGAAACATAGCAAGAAAAATAATATGTGTATGCAGTTGTTGTTTTCT
TTCTTTCTTTCTTTTTTTCTTTTCCGA
