Microarray Probes on PGSC0003DMT400001603
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45366_PI426222305 |
JHI_St_60k_v1 |
CAAGCCTGATTCTTTGAAGAGGAATCCTCAATGCACTGTTTGTTGTTACTGATTTAAAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001603
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001603 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G77330.1 |
+1 |
9e-37 |
137 |
99/300 (33%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307 |
Transcript Sequence (1230 bp)
>PGSC0003DMT400001603 1230 pgsc_dm_v3.4
TTCAACACCAGAAAATGCTTATAAAATAAACTCAAAAGAACATCCAAATATAAGACGAAG
AACGACATTGAAGAGAAAATTAAGGAAAACATCAATATGGCAAGTTTTGATATTCCAACA
ATTGATGTTTCTCCATTTTTTAAATCAGAGGAAAATGAAGAAGGGAAAAAGAAGGCTATG
GAGCAAATTAAAGAAGCTTGCGTTAACTATGGTTTCTTTCAGATTGTGAATCACGGAATT
CCTTCAGACTTGTTGAGTAGAACCATCGATATGTATAAGACTTTCTTTGCCTGTTCGGAT
GAAGAAAAACTGTCGGTACCTGATAATTATTTAAAAAGCACACCGAATTCAGCTGATACT
TTTGAGCACTTGTGGTTTCGTTTTCCGTTCTCTGGCTTCAATAACTGCCGCAGCATTACA
CCTTATTTCAAGCAAGTATTGGAGGAGATGGTTTCCCATTTCACAAAAGTAGGAGTTGTG
TTGGAAGGAATCATAAGTGAGTGTCTTGGACTCCCTCCTGACTTCCTATCAAACTACAGA
AATGATCGTTCTCGGGACTCATTGATGGGCCTCCACTACTTTCCAGCGACAGAAGATGAC
AACACAGGAAAACCTGCACATGAAGATCCTGGCTGCTTCACTATTCTCTACCAGGATGAA
ATCGGAGGCCTTCAGGTGCACAAAGATGACCAGTGGATATCCATAGCGCCTTCCAAAAAC
AAACTAGTTGTTAACATTGGTGATGTCATTCAGGTGCTAAGCAACAATAAATTCAAGAGT
GCATCGCACAGGGTGATCAGACCAAGAGAAACAAACCGTTACTCGTGTGCTTTCTTCTAT
AACGTGCAAGGAGACAAGTGGGTTGAGCCATTACCACAATGCACCAAGGAAATTGGAGAA
TCGCCCAAGTACAGAGGATTCCTCTTTAAAGAATATGTGCAGTTGAGACAGAGAGACGAG
ACTCATCCACCAGCTAGACCTGAAGATCAATTCAATATAACCCACTACTCAATTTTCTAA
TTAGAGGACAAGTCTATATGGAAAGAAACATAGCATTAATATGTATGTCAAAGTGTGTGA
TTATCTCATTTAAACTGTTACTGGGGACACAATTATTTTCTTAATTATGTTAACACGTCT
TTGATCGTACAAGCCTGATTCTTTGAAGAGGAATCCTCAATGCACTGTTTGTTGTTACTG
ATTTAAAATAATCAAATTGCAGACTTGTTT
