Microarray Probes on PGSC0003DMT400001330
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1064_PI426222305 |
JHI_St_60k_v1 |
TTATGTTGGCAACTGCAAATTCAACCAAAATCCTAACAAGAGCTGCTTCTCTGCAGATAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001330
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400001330 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g087000.2 |
+2 |
0.0 |
923 |
469/477 (98%) |
genomic_reference:SL2.50ch02 gene_region:44137630-44143256 transcript_region:SL2.50ch02:44137630..44143256+ go_terms:GO:0009674 functional_description:Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter |
| TAIR PP10 |
AT5G14880.1 |
+2 |
0.0 |
710 |
360/482 (75%) |
Potassium transporter family protein | chr5:4814244-4817667 FORWARD LENGTH=781 |
Transcript Sequence (1684 bp)
>PGSC0003DMT400001330 1684 pgsc_dm_v3.4
TACCAAGTTGAAGTGCTTTATGTTGGCAACTGCAAATTCAACCAAAATCCTAACAAGAGC
TGCTTCTCTGCAGATAGCTTTTACCTTTGTTGTTTACCCATCATTAATTCTTGCTTATAT
GGGACAAGCTGCGTATCTTTCCAAGCATCACGTTATCGCAAGTGATTACCACATTGGGTT
CTATGTATCAGTACCTGAAAAACTACGCTATCCTGTTCTAGCTATTGCAATACTTGCTGC
AGTGGTTGGAAGCCAGGCCATCATCACTGGGACGTTTTCCATAATCAAGCAATGTTCTGC
TTTGGGTTGCTTCCCAAGGGTCAAAATAGTACATACATCATCCAAAATCCATGGGCAGAT
TTACATTCCAGAGGTAAACTGGACGTTGATGGTGCTATGCTTGGCAGTTACGATCGGCTT
CCGTGACACAAAACACATAAGCAATGCATCAGGTCTGGCAGTTATAACTGTTATGCTGGT
CACTACCTGCTTCATGTCTCTAGTCATTGTCCTCTGTTGGCACAAAAACGTGTTGTTCGC
CATTTGCTTTATATTCTTCTTTGGTTCCATTGAAGCCCTCTACTTTTCAGCTTCCCTAAT
CAAGTTCCTCGAAGGTGCCTGGGTACCGATTGTTCTCTCTTTTATATTTCTAGCTGTCAT
GTATAGTTGGCATTACGGAACCCTGAAGAAGTACGAGTTTGATGTTGATAACAAAATTCC
CATCAACTGGCTGCTCACCTTGAGTCCCAACCTGGGTATTACCCGGGTCCGTGGCATTGG
TCTGATTCACACCGAGCTTGTTACAGGAATTCCAGCTATTTTCTCCCATTTCATCACCAA
CCTCCCTGCTTTCCACCAGGTTCTTGTTTTCCTTTGCATCAAGTCCGTCCCAGTACCTCA
CGTGAGACCTGAAGAAAGGTTCCTTGTTGGAAGAATCGGACCCAAAGAGTACCGTGTCTA
CAGATGCATAGCACGATATGGTTATCGAGACATTCACATGGACGACGTAGAGTTTGAAAA
GGATCTAGTTTGTAGCATAGCTGAATTCATCCGCTCAGAGGGACGAGGACAGAGTTTTGA
AGCTGTAGAAGATATAGACGCCAATGAAAGGCTGACGGTTATTGGGACAACTTCAACACA
CATTGATGGGATAAGAATATGCGAGGACAACGGAGGGTTGACTCATGTAGATACAGAAAT
GATAGAGATCAGCTCGCCAGAAGTACCACGAAAAAGAGTAAGATTTCTGGTGCCAGAGAG
TCCACAAATGGATTTAAGCGTTCGCGAAGAGTTGCAAGAACTCATGGAAGCTAGGGAAGC
AGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGAT
AAAAAAACTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAAC
ATATGCATTGAGCTTCCCTCAAGCTTCAACTTTGGAGGTTGGAATGATCTACCATGTATA
ATTTGTGCTTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTTTAA
AATTCGAAAAGCTTTGTAAATGTTGTAATGGTACATGAGTTTTTGCTTTATGCAAGGCAA
TAAATACCACGAGAAAAGGAAATACTGAGCTTTAGAGGCATGTATGTTTGAATAAAGGGA
TAAA
