Microarray Probes on PGSC0003DMT400001280
Probe ID | Chip | Probe Sequence |
---|
CUST_1251_PI426222305 |
JHI_St_60k_v1 |
GCAGAAGTGTTCATTTGAACTGCTTTTTCATTTACCTCTTTTTGAACATTTCCAACCTCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001280
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Source Transcript PGSC0003DMT400001280 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) |
Solyc02g086710.2 |
+2 |
4e-152 |
439 |
237/241 (98%) |
genomic_reference:SL2.50ch02 gene_region:43930486-43935980 transcript_region:SL2.50ch02:43930486..43935980+ go_terms:GO:0005524,GO:0016656 functional_description:Monodehydroascorbate reductase (NADH)-like protein (AHRD V1 **** Q0WUJ1_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
TAIR PP10 |
AT3G27820.1 |
+2 |
5e-131 |
385 |
204/241 (85%) |
monodehydroascorbate reductase 4 | chr3:10315249-10317881 FORWARD LENGTH=488 |
Transcript Sequence (913 bp)
>PGSC0003DMT400001280 913 pgsc_dm_v3.4
ATTTGAAAAGGGTAAGATTTTAAATTTGGGATTTTTGGTCCTTTGAATTTTGGGGAAAGG
GGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGC
AGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGA
ACCTGTTGCTCCTTATGAACGACCGGCATTAAGCAAGGGTTATTTACTACCAGAAGATCC
TGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACGCCGAA
GTGGTACAAGGAAAACGGCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGT
GAGACGGAAGACATTGTTGACTGCAACTGGTGAAACCATAACCTACAAGATTCTCATAGT
GGCAACTGGTGCTCGGGCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGA
GAGTGTATGTTATTTACGAGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATC
CAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGC
TTCTTTGGTTATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTATGGC
CCGCCTATTTACTGCTAAAATTGCAAGTTTCTACGAAGAATTTTACCGGTCAAAAGGAGT
TAAGTTTGTGAAAGGAACGGTATTGACATCATTTGATTTTGACTCCAATGATAAGGTAAA
GCCTGTTGCTTGCTTCACTTAGGCGGCGTTTGCTTGATAGCTTTTCGCAGAAGTGTTCAT
TTGAACTGCTTTTTCATTTACCTCTTTTTGAACATTTCCAACCTCAATTTGACTAGTTAC
TTTGTTAGTGCAA