Microarray Probes on PGSC0003DMT400000653

Probe IDChipProbe Sequence
CUST_3221_PI426222305 JHI_St_60k_v1 GTAGTAGCAAATTTTCCGTGACTGTCTATAGTAGTACACATTTTCTATCATAATCAAGGC

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000653

Click here to view details at Spud DB Genome Browser (opens in new window)


Source Transcript PGSC0003DMT400000653 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT1G01260.1 +2 5e-73 252 120/173 (69%) basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:109595-111367 FORWARD LENGTH=590

Transcript Sequence (2460 bp)

>PGSC0003DMT400000653 2460 pgsc_dm_v3.4
ATACAGTTGGGATTTAGAACAAACCCAAAAACTTTGCCTCCCCTTAACTTCTCTCTCTTT
TACTTTGCAACAAAATAGAGAAAACATCATCTTTCATTTTTTTTTCCTGAGAAAACCACA
AATCTCTCTTTATTGAGGAAAAACTATAATAATTCTCCCAATTGAAAACATCAGTTTTGT
TTCAGAGCTCAAAAGTTTTGTTTGTTTCTGTTTCTTAACTGCAACTGCAGTGCAGAGTTA
CTGGTGTGTATTTTTTTTGCTGCTTTTAACCAATCTTTGTTTCTTTTTTTGTCCATATAT
GTGCATTTTTATGTCAAAGTTGTATCTTTTCTGGGTATTTTCTTATAGTTACTGATACCC
TTTAGATTTTCAAGCTTTTGAGATCTGAAATTTGAGGTATGGACGATTGGGAGTTCAATA
AAAAGAAGAAGATCAATTGTTTTGAATCAAGTTAAGATGGGTTTATTTTAGATTGGTTAA
TTGGTGTTGTAAAATGTGTTAAAGGTTGAAGCTTTGGAGAAAAAAAAAGAAAAAGAATTG
TCTTTTTAGTTCTTGTTTCATCTTAGGAATATAAAATTTGGAATCTTTTTTTTTTTTTTG
GGTGTTTTGTAGTTGAAGGGATTTTATTACTAGGTAGATAGATATGGTTACTGGGAATAT
GTTGTGGAGTGGTGAGGATAAAGCTACGGTGGCGGCTGTTTTAGGAAAGGAAGCTTTTGA
ATATTTGATGTCTGGCTCTGTTTCAGCAGAATGTTCTTTAATGGCAATAGGGAATGATCA
GAATTTGCAGAATAAGCTTTCAGATCTCGTGGAATGCCCAAACGCCGCTAACTTTAGCTG
GAATTATGCCATCTTTTGGCAAATTTCGCGGTCTAAGTCAGGGGAATTGGTTCTAGGGTG
GGGGGATGGGTGTTGCAGAGAGCCTAAGGAAGGAGAGGAGCGTGAAGTTAAAAGGATTTT
CAATCTACGCCTCGACGATGAGGGTCAACAAAGGATGAGGAAGAGGGTACTTCAAAAGTT
GCATATGTTATTTGGTGGAACAGATGAAGATAACTATGCTTTTGGATTAGATAGAGTTAC
TGATACTGAAATGTTCTTCCTTGCCTCGATGTATTTTTCGTTCCCTCGAGGAGAGGGAGG
TCCGGGGAAGTGTTTTGGATCAGGGATAAGCAAGCAGCAGGTATAGCAGTTGTACCTGAG
AAAAAAGAGGGAAACAATCCCCGCCTTTCCAACTCAGGCGCTGTTACTGAACGAACAGAC
GGAAATCCTAAGCTATTTGGGCATGATTTGAATTCGGGCACTCACTTTAGGGAAAAACTT
GCTGTTAGGAAAGCGGAGGAGAGGCCATGGGAAAATGGTAACAGAATGCCATTTGTGAAC
GCACGGAATGGTTTAAATCCTGCTTCTTGGGCTCAATTCAGTAATGTGAAGCCGGGAAAA
CCTGTGGAGCTCTATGGTCCTCCAACCCCAGGACACAACCTAATCAATGGTGGAAGGGAA
GAATTCCGCTTGAACAACTTTCAACATCAAAAGCCAGCTGCTAGAATGCAAATTGATTTC
ACCGGAGCAACCTCGAGACCCATTGTTTCGCCAGCACACACTGTTGAGTCTGAACATTCA
GATGTTGAAGTTTCGTGCAAGGAAGACCGTGGAGGCCCAGTGGATGAAAAGAGGCCTCGA
AAACGTGGAAGAAAGCCAGCCAACGGAAGGGAAGAGCCTCTCAATCATGTAGAGGCAGAG
AGGCAGCGGAGGGAAAAATTGAACCAGCGGTTCTATGCCTTACGAGCTGTTGTTCCGAAT
ATCTCCAAGATGGACAAAGCTTCCCTCTTAGGGGATGCCATTGCTTACATAACTGAGCTG
CAGAAAAAACTTAGAGATATGGAATCTGAGAGGGAAAACACTTCAAGGGATGCAATCGCT
TCAGAAGACAGCCCGAGTTCAGAGATTCAAATCCGAGGACCCAACATCAACATAGAAGCT
GCCAATGATGAAGTCATTGTAAGGGTGAGCTGCTCAATGGAAACCCATCCACTATCTCGA
GTCATCCAAATATTCAAAGAGGCGCAAATCAACGTTGTTGAATCAAAACTTTCCGCGGGG
AATGGTACTGTGTATCACACATTTGTCCTCAAGTCTAGTGGATCTGAACAGCTGACTAAG
GAAAAGTTGCTGGCTGCATTTTCCAGTGAATCAAACTCGTTAAGGCAACTTTCACCGGTA
GGGCAATAGCAGTATCATGTTTTATATATATATATATATATATATATACTCCAGTTGTTA
GGGATATAAATGTAGTGAAGAATCCATATCGTAGTTTTTATTTTCTTTTCTGCAGAAAAT
TTCGTATACATCAGTTCAAGATAGGTGGAAAATAACTATCTATTGACAAAGTAGTAGCAA
ATTTTCCGTGACTGTCTATAGTAGTACACATTTTCTATCATAATCAAGGCTAAGATTAAT