Microarray Probes on PGSC0003DMT400000652
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3027_PI426222305 |
JHI_St_60k_v1 |
GTAGTAGCAAATTTTCCGTGACTGTCTATAGTAGTACACATTTTCTATCATAATCAAGGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000652
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400000652 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G01260.1 |
+2 |
0.0 |
538 |
315/627 (50%) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:109595-111367 FORWARD LENGTH=590 |
Transcript Sequence (2671 bp)
>PGSC0003DMT400000652 2671 pgsc_dm_v3.4
ATACAGTTGGGATTTAGAACAAACCCAAAAACTTTGCCTCCCCTTAACTTCTCTCTCTTT
TACTTTGCAACAAAATAGAGAAAACATCATCTTTCATTTTTTTTTCCTGAGAAAACCACA
AATCTCTCTTTATTGAGGAAAAACTATAATAATTCTCCCAATTGAAAACATCAGTTTTGT
TTCAGAGCTCAAAAGTTTTGTTTGTTTCTGTTTCTTAACTGCAACTGCAGTGCAGAGTTA
CTGGTGTGTATTTTTTTTGCTGCTTTTAACCAATCTTTGTTTCTTTTTTTGTCCATATAT
GTGCATTTTTATGTCAAAGTTGTATCTTTTCTGGGTATTTTCTTATAGTTACTGATACCC
TTTAGATTTTCAAGCTTTTGAGATCTGAAATTTGAGGTATGGACGATTGGGAGTTCAATA
AAAAGAAGAAGATCAATTGTTTTGAATCAAGTTAAGATGGGTTTATTTTAGATTGGTTAA
TTGGTGTTGTAAAATGTGTTAAAGGTTGAAGCTTTGGAGAAAAAAAAAGAAAAAGAATTG
TCTTTTTAGTTCTTGTTTCATCTTAGGAATATAAAATTTGGAATCTTTTTTTTTTTTTTG
GGTGTTTTGTAGTTGAAGGGATTTTATTACTAGGTAGATAGATATGGTTACTGGGAATAT
GTTGTGGAGTGGTGAGGATAAAGCTACGGTGGCGGCTGTTTTAGGAAAGGAAGCTTTTGA
ATATTTGATGTCTGGCTCTGTTTCAGCAGAATGTTCTTTAATGGCAATAGGGAATGATCA
GAATTTGCAGAATAAGCTTTCAGATCTCGTGGAATGCCCAAACGCCGCTAACTTTAGCTG
GAATTATGCCATCTTTTGGCAAATTTCGCGGTCTAAGTCAGGGGAATTGGTTCTAGGGTG
GGGGGATGGGTGTTGCAGAGAGCCTAAGGAAGGAGAGGAGCGTGAAGTTAAAAGGATTTT
CAATCTACGCCTCGACGATGAGGGTCAACAAAGGATGAGGAAGAGGGTACTTCAAAAGTT
GCATATGTTATTTGGTGGAACAGATGAAGATAACTATGCTTTTGGATTAGATAGAGTTAC
TGATACTGAAATGTTCTTCCTTGCCTCGATGTATTTTTCGTTCCCTCGAGGAGAGGGAGG
TCCGGGGAAGTGTTTTGGATCAGGTAAGCATTTGTGGTTATCAGATGCATTGACATCTAA
TCTAGAGTATTGTGCTAGATCTTTCTTAGCTAAGTCTGCTGGTATGCAAACTATTGTTTT
GATTCCAACTGATGTAGGAGTTGTGGAATTGGGGTCAGTGAGATCAATTCCGGAAAGTTT
GGAGCTATTACAGAATATAAAATCTTGCTTCTCGTCGTTTTTGTCACTTGTTAGGGATAA
GCAAGCAGCAGGTATAGCAGTTGTACCTGAGAAAAAAGAGGGAAACAATCCCCGCCTTTC
CAACTCAGGCGCTGTTACTGAACGAACAGACGGAAATCCTAAGCTATTTGGGCATGATTT
GAATTCGGGCACTCACTTTAGGGAAAAACTTGCTGTTAGGAAAGCGGAGGAGAGGCCATG
GGAAAATGGTAACAGAATGCCATTTGTGAACGCACGGAATGGTTTAAATCCTGCTTCTTG
GGCTCAATTCAGTAATGTGAAGCCGGGAAAACCTGTGGAGCTCTATGGTCCTCCAACCCC
AGGACACAACCTAATCAATGGTGGAAGGGAAGAATTCCGCTTGAACAACTTTCAACATCA
AAAGCCAGCTGCTAGAATGCAAATTGATTTCACCGGAGCAACCTCGAGACCCATTGTTTC
GCCAGCACACACTGTTGAGTCTGAACATTCAGATGTTGAAGTTTCGTGCAAGGAAGACCG
TGGAGGCCCAGTGGATGAAAAGAGGCCTCGAAAACGTGGAAGAAAGCCAGCCAACGGAAG
GGAAGAGCCTCTCAATCATGTAGAGGCAGAGAGGCAGCGGAGGGAAAAATTGAACCAGCG
GTTCTATGCCTTACGAGCTGTTGTTCCGAATATCTCCAAGATGGACAAAGCTTCCCTCTT
AGGGGATGCCATTGCTTACATAACTGAGCTGCAGAAAAAACTTAGAGATATGGAATCTGA
GAGGGAAAACACTTCAAGGGATGCAATCGCTTCAGAAGACAGCCCGAGTTCAGAGATTCA
AATCCGAGGACCCAACATCAACATAGAAGCTGCCAATGATGAAGTCATTGTAAGGGTGAG
CTGCTCAATGGAAACCCATCCACTATCTCGAGTCATCCAAATATTCAAAGAGGCGCAAAT
CAACGTTGTTGAATCAAAACTTTCCGCGGGGAATGGTACTGTGTATCACACATTTGTCCT
CAAGTCTAGTGGATCTGAACAGCTGACTAAGGAAAAGTTGCTGGCTGCATTTTCCAGTGA
ATCAAACTCGTTAAGGCAACTTTCACCGGTAGGGCAATAGCAGTATCATGTTTTATATAT
ATATATATATATATATATACTCCAGTTGTTAGGGATATAAATGTAGTGAAGAATCCATAT
CGTAGTTTTTATTTTCTTTTCTGCAGAAAATTTCGTATACATCAGTTCAAGATAGGTGGA
AAATAACTATCTATTGACAAAGTAGTAGCAAATTTTCCGTGACTGTCTATAGTAGTACAC
ATTTTCTATCATAATCAAGGCTAAGATTAAT
