Microarray Probes on PGSC0003DMT400000459
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2828_PI426222305 |
JHI_St_60k_v1 |
GCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATAAAATTTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000459
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400000459 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G01770.1 |
+1 |
0.0 |
614 |
337/562 (60%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632 |
Transcript Sequence (2296 bp)
>PGSC0003DMT400000459 2296 pgsc_dm_v3.4
TTGCTAAGAAGTTCATATTATTTTTTTTGATGAATCCATAAAATTTTTAGCATCAATGTT
TAGCAGAAGGAATTGATTATTGAACGATTGATAGGGTTGTAATGGAAGAACTAGGTGTTG
ATACACCTGTGAGTTATGACTGTGAGATCAGACTGAGGGTGAATCCTCAAAGGCGAAAGG
AAAAGGTTTACGTAGGTTGTGGTGCTGGATTTGGAGGTGATCGACCAATAGCAGCGTTAA
AGCTACTTCAGAGGGTGAGGGAGTTGGATTATTTAGTGCTGGAATGCCTAGCAGAGCGCA
CCCTGGCTGAGCGCTATCAGGCCATGAAATCTGGTGGCGAGGGTTATGATCCCCGTATTT
GGTATAGTCTCAGAGTGGATGCAACTGCTCTTGCCTTTGGCTGTGGAGAATGGAGTTTGC
ATTATTACAAACATGGGTGCAAATGATCCATTTGGCGCTCGGGATGAAGTTTTACGACTT
GCAAGCGGACTGGGCATCTCTATAACTGTTGGTCTGGCTCATCAAGTTGCTGTTGTCAGA
TCAGATTTGGAGGAGCACCTTAAACATGTTGATGATGTTAGTGTGTATCTAGGAGCAGCT
CCTATTGTTGAATGTCTTCAGAATTTCAGACCGAATGTAATTATTACTTCTCGAGTTGCT
GATGCTTCCTTATTCTTAGCCCCAATGGTGTATGAGCTCGGTTGGAACTGGGATGACTTG
CACCTGCTTGCCCAAGGTTCACTGGCTGGCCACCTGCTAGAATGTGGTTGCCAACTTACT
GGAGGATACTATATGCATCCAGGAGATAAATACCGTGATATATCTCTGCAAGATCTCCTA
GATTTATCTCTTCCTTTTGCGGAAGTTAGCTTTGATGGGAAAGTATGTGTAGCAAAGGCG
GAAAGCAGTGGTGGGGTTTTGAATCCCTGCACGTGTGCTGAGCAGCTTCTGTATGAAGTG
GGGAATCCTAGTAGCTACATAACCCCAGACGTGGTTGTAGATTTTCAAGATGTTTCATTT
CAGACATTATCAAGCAGTAAAGTTCTCTGTGCTGGGGCAAAACCATCTGCAGCAGCTCCT
AATAATCTGTTGCTGCTGGCCTCCAAGGACAAGGGGTGGAAGGGCTGGGGAGAGATATCC
TATGGTGGATATCAGTGTGTTAAACGTGCTAAAGCTGCTGATTTTTTGGTAAGATCATGG
ATGGAAGAAGTATACCCTGGCATAAGCAAACATATAGTTTCCTATATCATTGGACTGGAT
AGCCTGAAAGCTGTTAGCATAGATGAAGATTTGCCAAGGGATAGTCAAGATATTAGATTA
CGAATGGATGGTTTATTTGAGAATAAGGAACAAGCAATCCACTTTACAAAAGAGTTCATA
GCATTATATACAAATGGACCTGCTGGTGGTGGCGGTATCAGCACTGGACACAAAAAAGAC
ATCATTCTTGAGAAAGCACTGGTAAAACGTAAAGATGTTCAGTGGCATATGACAGCAACA
AGAAATAAAATTATGCAATCAGATGATCTGGCTAGCCCTAAAAACATAATACAGACCAGT
TCATTCCATGAATCAGTCTTGCAATCACTTACAATGGAAACTACTTTGAATCACAAAGAA
GGTTCACCGCAAATTGAGCTGATCTCCCCTGCTCCACATGACAGGAAGATTCCTCTTTAT
GATTTTGCACATAGCAGAGCTGGTGATAAAGGGGATGATATAAACTTTTCCCTTATCCCA
TATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACTCAAGAATGGGTGAAAAAA
GTTGTCTCAAGTCTTCTTAATCCCTCTTCTTTTCCCACTTCTGATGATATTGAACAAAGA
AACAAATGGATCAGTGAACATGTTGAAGTGGAGATTTATGAAGTCAGAGGGATCCATTCT
TTGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAACTGCTCAAGGAGAATCGAT
AGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAAGTGTTATTGCCTCTGTAA
TTGAACAGATGGCAAGACTGGAAAAGACACGCTGACTCCATTTTCTTTATCCTGGGAGGT
GATAGTAGTGACAGTGGGGTGGGGGACAAGCTCCTGGCCTAGCTACAAGTTGGAGTATAC
CAGAACCTGAAGACTTACTTTTGAAATAAAATTTGTTGTAGTACCAGTACATGTTCATAA
ACAAGTTGTCTGAACTCTTTATTCTGAAATAAAATTACTGTTGCAGAGTTTTTTACTCTT
TGTGAAAGCCATGAAT
