Microarray Probes on PGSC0003DMT400000458
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2909_PI426222305 |
JHI_St_60k_v1 |
GCCTAGCTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATAAAATTTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400000458
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400000458 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G01770.1 |
+1 |
0.0 |
551 |
299/488 (61%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632 |
Transcript Sequence (2614 bp)
>PGSC0003DMT400000458 2614 pgsc_dm_v3.4
TATTATATTTGTTAAACTGGTCCTACAAACTTTACGATATGCATTGCCACGACTCAGATA
CTATATTACTTATTAGATCACGTAGAGCAGCAGTGGCAAAATTCTTTTTGAATTCTCTAA
CGAGCCGGCGAAAGGGACTACCAAAACTCAGATACTTCTGCCAATTTTTCAATCTCAACC
GTAATTTCAAGGTTGTAATGGAAGAACTAGGTGTTGATACACCTGTGAGTTATGACTGTG
AGATCAGACTGAGGGTGAATCCTCAAAGGCGAAAGGAAAAGGTTTACGTAGGTTGTGGTG
CTGGATTTGGAGGTGATCGACCAATAGCAGCGTTAAAGCTACTTCAGAGGGTGAGGGAGT
TGGATTATTTAGTGCTGGAATGCCTAGCAGAGCGCACCCTGGCTGAGCGCTATCAGGCCA
TGAAATCTGGTGGCGAGGGTTATGATCCCCGTATCTCAGAGTGGATGCAACTGCTCTTGC
CTTTGGCTGTGGAGAATGGAGTTTGCATTATTACAAACATGGGTGCAAATGATCCATTTG
GCGCTCGGGATGAAGTTTTACGACTTGCAAGCGGACTGGGCATCTCTATAACTGTTGGTC
TGGCTCATCAAGTTGCTGTTGTCAGATCAGATTTGGAGGAGCACCTTAAACATGTTGATG
TAAGATTTGGCAATATACAATATTTTCAATGGTACATGTCAGCATCATTTATTCCATCAA
GTACAAAAATTGTGCTGTGCAGGTCTTGTATCTAATTTTTCTGATGCTTCTGGGTGGGTT
CATTTGTTAAATCTTAATTGAGTGATCATTTCATCCTCGTTCTGTAGATCCTTGGTTACA
TAAGTATTACGATTATAGTAGCACCCTTTTTCCCTTCTTTTTTTTCTGCAGGATGTTAGT
GTGTATCTAGGAGCAGCTCCTATTGTTGAATGTCTTCAGAATTTCAGACCGAATGTAATT
ATTACTTCTCGAGTTGCTGATGCTTCCTTATTCTTAGCCCCAATGGTGTATGAGCTCGGT
TGGAACTGGGATGACTTGCACCTGCTTGCCCAAGGTTCACTGGCTGGCCACCTGCTAGAA
TGTGGTTGCCAACTTACTGGAGGATACTATATGCATCCAGGAGATAAATACCGTGATATA
TCTCTGCAAGATCTCCTAGATTTATCTCTTCCTTTTGCGGAAGTTAGCTTTGATGGGAAA
GTATGTGTAGCAAAGGCGGAAAGCAGTGGTGGGGTTTTGAATCCCTGCACGTGTGCTGAG
CAGCTTCTGTATGAAGTGGGGAATCCTAGTAGCTACATAACCCCAGACGTGGTTGTAGAT
TTTCAAGATGTTTCATTTCAGACATTATCAAGCAGTAAAGTTCTCTGTGCTGGGGCAAAA
CCATCTGCAGCAGCTCCTAATAATCTGTTGCTGCTGGCCTCCAAGGACAAGGGGTGGAAG
GGCTGGGGAGAGATATCCTATGGTGGATATCAGTGTGTTAAACGTGCTAAAGCTGCTGAT
TTTTTGGTAAGATCATGGATGGAAGAAGTATACCCTGGCATAAGCAAACATATAGTTTCC
TATATCATTGGACTGGATAGCCTGAAAGCTGTTAGCATAGATGAAGATTTGCCAAGGGAT
AGTCAAGATATTAGATTACGAATGGATGGTTTATTTGAGAATAAGGAACAAGCAATCCAC
TTTACAAAAGAGTTCATAGCATTATATACAAATGGACCTGCTGGTGGTGGCGGTATCAGC
ACTGGACACAAAAAAGACATCATTCTTGAGAAAGCACTGGTAAAACGTAAAGATGTTCAG
TGGCATATGACAGCAACAAGAAATAAAATTATGCAATCAGATGATCTGGCTAGCCCTAAA
AACATAATACAGACCAGTTCATTCCATGAATCAGTCTTGCAATCACTTACAATGGAAACT
ACTTTGAATCACAAAGAAGGTTCACCGCAAATTGAGCTGATCTCCCCTGCTCCACATGAC
AGGAAGATTCCTCTTTATGATTTTGCACATAGCAGAGCTGGTGATAAAGGGGATGATATA
AACTTTTCCCTTATCCCATATTTTCCTCCAGATATTGAAAGGCTTAAGAAGATTGTAACT
CAAGAATGGGTGAAAAAAGTTGTCTCAAGTCTTCTTAATCCCTCTTCTTTTCCCACTTCT
GATGATATTGAACAAAGAAACAAATGGATCAGTGAACATGTTGAAGTGGAGATTTATGAA
GTCAGAGGGATCCATTCTTTGAATATAGTGGTTCGTAATATCCTAGATGGAGGTGTGAAC
TGCTCAAGGAGAATCGATAGGCATGGAAAGACTCTATCCGATCTCATATTGTGCCAGAAA
GTGTTATTGCCTCTGTAATTGAACAGATGGCAAGACTGGAAAAGACACGCTGACTCCATT
TTCTTTATCCTGGGAGGTGATAGTAGTGACAGTGGGGTGGGGGACAAGCTCCTGGCCTAG
CTACAAGTTGGAGTATACCAGAACCTGAAGACTTACTTTTGAAATAAAATTTGTTGTAGT
ACCAGTACATGTTCATAAACAAGTTGTCTGAACTCTTTATTCTGAAATAAAATTACTGTT
GCAGAGTTTTTTACTCTTTGTGAAAGCCATGAAT
