MLOC_9944 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.1110427.371726.817417.5601
LEAShoots from the seedlings (10 cm shoot stage)33.834437.230516.891922.1619
INF1Young developing inflorescences (5mm)63.483557.39165.325343.3421
INF2Developing inflorescences (1-1.5 cm)84.563768.152175.197274.8303
ROORoots from the seedlings (10 cm shoot stage)7.4531611.924814.086511.7442
NODDeveloping tillers at six leaf stage, 3rd internode22.939713.709421.063448.085
CAR5Developing grain, bracts removed (5 DPA)34.610228.374532.533527.2594
CAR15Developing grain, bracts removed (15 DPA)20.694220.978322.566440.9245



CDS Structure of MLOC_9944






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_9944.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_9944.2CUST_11209_PI427708083AvailableAvailablecontig_1558104 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41590.1 +3 2e-73 243 155/216 (72%) 13110.m03883 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT1G55250.3 +3 2e-34 133 91/215 (42%) | Symbols: HUB2 | histone mono-ubiquitination 2 | chr1:20607214-20612302 FORWARD LENGTH=899