MLOC_9921 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6681730.9050711.278880.869885
LEAShoots from the seedlings (10 cm shoot stage)0.2092690.069878300.131374
INF1Young developing inflorescences (5mm)3.1133.218492.85152.37349
INF2Developing inflorescences (1-1.5 cm)2.502912.781162.936082.77098
ROORoots from the seedlings (10 cm shoot stage)00.1953400.543708
NODDeveloping tillers at six leaf stage, 3rd internode00.07177760.01954250.337688
CAR5Developing grain, bracts removed (5 DPA)0.8050810.8895190.9057990.769332
CAR15Developing grain, bracts removed (15 DPA)0.085748600.1258070.196738



CDS Structure of MLOC_9921






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_9921.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_9921.2NoneAvailableAvailablecontig_1558064 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g28580.1 +1 2e-37 148 84/256 (33%) 13104.m02709 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT4G38180.1 +1 4e-15 79 66/248 (27%) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788