MLOC_9890 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4653910.7263930.709810.637533
LEAShoots from the seedlings (10 cm shoot stage)0.3900810.3536890.1496150.250216
INF1Young developing inflorescences (5mm)1.709091.844971.43231.37461
INF2Developing inflorescences (1-1.5 cm)1.082141.236981.242911.2354
ROORoots from the seedlings (10 cm shoot stage)0.3113160.8883910.8954650.927623
NODDeveloping tillers at six leaf stage, 3rd internode0.02770440.01847670.04904250.0757953
CAR5Developing grain, bracts removed (5 DPA)1.201051.014811.385931.089
CAR15Developing grain, bracts removed (15 DPA)0.4659260.2330310.2272730.74589



CDS Structure of MLOC_9890






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_9890.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_9890.2CUST_17113_PI427708080AvailableAvailablecontig_1558023 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g13950.1 +2 0.0 773 417/560 (74%) 13106.m01541 protein pentatricopeptide, putative, expressed
TAIR PP10 AT3G61520.1 +2 2e-107 356 202/476 (42%) Pentatricopeptide repeat (PPR) superfamily protein | chr3:22768974-22771274 REVERSE LENGTH=766