MLOC_9850 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.018313700.04647370.0352582
INF2Developing inflorescences (1-1.5 cm)0.3657570.5827820.6499460.567489
ROORoots from the seedlings (10 cm shoot stage)0.03566820.02055070.06308840.0367747
NODDeveloping tillers at six leaf stage, 3rd internode0.01671780.012149200.0582563
CAR5Developing grain, bracts removed (5 DPA)0.01931960.05295450.02120290.0332127
CAR15Developing grain, bracts removed (15 DPA)00.02115930.02969620.0805037



CDS Structure of MLOC_9850






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_9850.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_9850.1CUST_17107_PI427708080AvailableAvailablecontig_1557960 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46650.1 +2 5e-65 233 115/244 (47%) 13102.m05237 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10 AT5G46740.1 +2 9e-64 229 125/310 (40%) | Symbols: UBP21 | ubiquitin-specific protease 21 | chr5:18965410-18968492 REVERSE LENGTH=732