MLOC_980 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.776041.307461.482921.62668
LEAShoots from the seedlings (10 cm shoot stage)0.6553410.6263210.2831980.479379
INF1Young developing inflorescences (5mm)2.407842.37732.473212.18152
INF2Developing inflorescences (1-1.5 cm)1.728862.1582.04472.27467
ROORoots from the seedlings (10 cm shoot stage)0.9546591.320031.220061.73306
NODDeveloping tillers at six leaf stage, 3rd internode0.8944750.5645960.7005242.09315
CAR5Developing grain, bracts removed (5 DPA)2.483552.400933.138252.74244
CAR15Developing grain, bracts removed (15 DPA)0.8719110.5876930.7832581.81398



CDS Structure of MLOC_980






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_980.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_980.1CUST_17098_PI427708080AvailableAvailablecontig_108118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g40130.1 -3 0.0 692 335/415 (81%) 13104.m03896 protein Rf1, mitochondrial precursor, putative, expressed
TAIR PP10 AT2G15630.1 -3 5e-121 382 201/419 (48%) Pentatricopeptide repeat (PPR) superfamily protein | chr2:6814521-6816404 FORWARD LENGTH=627