MLOC_9621 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3607730.3205970.2097150.335408
LEAShoots from the seedlings (10 cm shoot stage)0.9815980.2974650.2920220.452848
INF1Young developing inflorescences (5mm)1.000170.7170620.635070.772672
INF2Developing inflorescences (1-1.5 cm)10.31510.8798630.7871874.98624
ROORoots from the seedlings (10 cm shoot stage)0.3237770.372251.309580.608989
NODDeveloping tillers at six leaf stage, 3rd internode0.1102020.02797750.04695280.113576
CAR5Developing grain, bracts removed (5 DPA)0.4726060.587920.1575030.456609
CAR15Developing grain, bracts removed (15 DPA)0.3917070.29492601.15537



CDS Structure of MLOC_9621






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_9621.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_9621.1CUST_11154_PI427708083AvailableAvailablecontig_153961 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08440.1 +3 2e-28 91 46/63 (73%) 13103.m00970 protein ribosomal protein S2, putative, expressed
TAIR PP10 AT3G04770.1 +3 1e-22 72 37/61 (61%) | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309465-1310846 REVERSE LENGTH=332