MLOC_92 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.750944.224684.057082.79338
LEAShoots from the seedlings (10 cm shoot stage)2.602292.621593.04812.04139
INF1Young developing inflorescences (5mm)5.709346.524024.302874.04042
INF2Developing inflorescences (1-1.5 cm)3.0874.633782.258523.43229
ROORoots from the seedlings (10 cm shoot stage)0.5871531.227521.45891.22705
NODDeveloping tillers at six leaf stage, 3rd internode1.022881.159461.745893.69238
CAR5Developing grain, bracts removed (5 DPA)2.772654.157282.286972.77937
CAR15Developing grain, bracts removed (15 DPA)1.22080.7048190.6078882.02757



CDS Structure of MLOC_92






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_92.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_92.1CUST_13466_PI427708083AvailableAvailablecontig_10055 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48510.1 +2 5e-14 71 42/55 (76%) 13105.m05167 protein phenylalanyl-tRNA synthetase beta chain, putative, expressed
TAIR PP10 AT1G72550.2 +2 1e-12 66 40/53 (75%) tRNA synthetase beta subunit family protein | chr1:27319999-27323908 REVERSE LENGTH=584