MLOC_8530 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.878275.577894.502014.41647
LEAShoots from the seedlings (10 cm shoot stage)7.552946.247994.567294.77635
INF1Young developing inflorescences (5mm)6.580146.284248.384014.86367
INF2Developing inflorescences (1-1.5 cm)11.348311.440811.314810.2572
ROORoots from the seedlings (10 cm shoot stage)3.503034.698634.340074.65355
NODDeveloping tillers at six leaf stage, 3rd internode8.829469.570729.814826.9608
CAR5Developing grain, bracts removed (5 DPA)5.498946.544316.892134.88259
CAR15Developing grain, bracts removed (15 DPA)2.265631.912212.317624.02495



CDS Structure of MLOC_8530






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8530.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8530.1CUST_13458_PI427708083AvailableAvailablecontig_144072 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g50030.1 -3 9e-34 134 64/76 (84%) 13101.m05207 protein CPuORF25 - conserved peptide uORF-containing transcript, expressed
TAIR PP10 AT1G48600.1 -3 3e-26 111 52/74 (70%) | Symbols: PMEAMT, AtPMEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:17966448-17969077 FORWARD LENGTH=475