MLOC_8500 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2126181.120740.7576390.537259
LEAShoots from the seedlings (10 cm shoot stage)1.29840.9958930.6698870.681012
INF1Young developing inflorescences (5mm)1.364911.24161.411480.798969
INF2Developing inflorescences (1-1.5 cm)2.511832.064391.968091.83445
ROORoots from the seedlings (10 cm shoot stage)0.4247220.414490.5603620.38537
NODDeveloping tillers at six leaf stage, 3rd internode0.7708921.147740.5675292.72745
CAR5Developing grain, bracts removed (5 DPA)1.611431.486361.665441.10567
CAR15Developing grain, bracts removed (15 DPA)1.72861.591031.538792.60517



CDS Structure of MLOC_8500






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8500.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8500.2NoneAvailableAvailablecontig_143646 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28770.1 +2 1e-92 306 158/212 (75%) 13109.m02839 protein patatin, putative, expressed
TAIR PP10 AT2G26560.1 +2 1e-72 249 123/172 (72%) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407