MLOC_8487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.9236127.763724.265922.7893
LEAShoots from the seedlings (10 cm shoot stage)29.059120.414313.046518.9309
INF1Young developing inflorescences (5mm)23.347421.632618.088918.2639
INF2Developing inflorescences (1-1.5 cm)22.53324.271620.634426.4514
ROORoots from the seedlings (10 cm shoot stage)5.853914.01099.9983216.9534
NODDeveloping tillers at six leaf stage, 3rd internode16.01717.0738.3346659.7266
CAR5Developing grain, bracts removed (5 DPA)32.168228.390431.981331.9353
CAR15Developing grain, bracts removed (15 DPA)9.309028.168739.0376620.8505



CDS Structure of MLOC_8487






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354800NoneNoneNoneNone
MLOC_8487.1CUST_769_PI427708080AvailableAvailablecontig_143517 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38480.1 +2 0.0 1493 808/1133 (71%) 13102.m04234 protein expressed protein
TAIR PP10 AT1G24460.2 +2 2e-103 362 330/1181 (28%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1). | chr1:8666072-8672338 FORWARD LENGTH=1732