MLOC_8288 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4802670.2197490.07370750.265421
LEAShoots from the seedlings (10 cm shoot stage)0.0431582000.0394826
INF1Young developing inflorescences (5mm)0.02167950.02549530.02771880.0250203
INF2Developing inflorescences (1-1.5 cm)000.02815480.0275317
ROORoots from the seedlings (10 cm shoot stage)1.218130.7515631.427561.15771
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.1127320.1060790.02722970.0962541
CAR15Developing grain, bracts removed (15 DPA)0.060537100.1755150.279158



CDS Structure of MLOC_8288






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8288.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8288.1CUST_10966_PI427708083AvailableAvailablecontig_141896 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g38800.1 -2 0.0 540 290/451 (64%) 13103.m04212 protein AAA family ATPase, putative, expressed
TAIR PP10 AT5G17760.1 -2 2e-114 350 191/421 (45%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:5860591-5862301 REVERSE LENGTH=505