MLOC_8250 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.782882.671031.955531.80697
LEAShoots from the seedlings (10 cm shoot stage)1.630941.054751.515361.01563
INF1Young developing inflorescences (5mm)3.983234.439184.031212.82634
INF2Developing inflorescences (1-1.5 cm)4.578755.230836.001854.52318
ROORoots from the seedlings (10 cm shoot stage)0.8181781.336241.234891.14292
NODDeveloping tillers at six leaf stage, 3rd internode1.373172.304823.120646.21113
CAR5Developing grain, bracts removed (5 DPA)2.313092.071382.722371.75924
CAR15Developing grain, bracts removed (15 DPA)1.845870.952051.210442.73966



CDS Structure of MLOC_8250






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8250.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8250.1CUST_13451_PI427708083AvailableAvailablecontig_141715 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58540.1 +3 3e-19 70 32/36 (89%) 13103.m06429 protein spo0B-associated GTP-binding protein, putative, expressed
TAIR PP10 AT5G17990.1 +3 4e-11 67 45/58 (78%) | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444