MLOC_8248 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.166546000.2538
LEAShoots from the seedlings (10 cm shoot stage)0.23513000.222007
INF1Young developing inflorescences (5mm)0.2975651.062480.694560.671684
INF2Developing inflorescences (1-1.5 cm)0.5110320.2660410.2804850.437685
ROORoots from the seedlings (10 cm shoot stage)00.077662400.413218
NODDeveloping tillers at six leaf stage, 3rd internode0.1065130.1968240.4108580.763191
CAR5Developing grain, bracts removed (5 DPA)1.72682.517131.864512.37567
CAR15Developing grain, bracts removed (15 DPA)0.9453361.173381.290163.02845



CDS Structure of MLOC_8248






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8248.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8248.3CUST_16928_PI427708080AvailableAvailablecontig_141707 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15448.1 +3 1e-41 140 80/93 (86%) 13101.m01706 protein expressed protein
TAIR PP10 AT5G16950.1 +3 1e-16 74 42/96 (44%) unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5572640-5572939 FORWARD LENGTH=99