MLOC_8218 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.278240.968235.624223.5199
LEAShoots from the seedlings (10 cm shoot stage)34.190928.524935.895620.9548
INF1Young developing inflorescences (5mm)7.279978.399539.295164.81977
INF2Developing inflorescences (1-1.5 cm)7.779928.594718.696596.6918
ROORoots from the seedlings (10 cm shoot stage)18.282319.816923.591616.3661
NODDeveloping tillers at six leaf stage, 3rd internode11.854313.300516.121231.0386
CAR5Developing grain, bracts removed (5 DPA)22.135719.156124.280114.791
CAR15Developing grain, bracts removed (15 DPA)7.198747.069925.9920611.2617



CDS Structure of MLOC_8218






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8218.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8218.2CUST_13450_PI427708083AvailableAvailablecontig_141628 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28570.3 -3 1e-43 156 73/91 (80%) 13109.m02818 protein zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed
TAIR PP10 AT1G49670.1 -3 6e-30 117 52/88 (59%) | Symbols: NQR | ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=629