MLOC_82117 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.001116.837534.754386.20991
LEAShoots from the seedlings (10 cm shoot stage)203.99444.009331.241311.104
INF1Young developing inflorescences (5mm)20.05416.903912.136815.485
INF2Developing inflorescences (1-1.5 cm)17.168616.379216.736520.2865
ROORoots from the seedlings (10 cm shoot stage)2.27924.142176.911765.87799
NODDeveloping tillers at six leaf stage, 3rd internode165.517155.715154.682588.59
CAR5Developing grain, bracts removed (5 DPA)67.138555.700659.847165.9847
CAR15Developing grain, bracts removed (15 DPA)7.6430510.7267.9062823.0007



CDS Structure of MLOC_82117






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82117.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249924.1NoneNoneNoneNone
MLOC_82117.2CUST_18499_PI427708080AvailableAvailablecontig_98636 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g20700.2 -1 0.0 2410 1220/1347 (91%) 13103.m02483 protein magnesium-chelatase, putative, expressed
TAIR PP10 AT5G13630.1 -1 0.0 2267 1130/1336 (85%) | Symbols: GUN5, CCH, CHLH, CCH1, ABAR | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) | chr5:4387567-4392082 REVERSE LENGTH=1381