MLOC_82115 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2272850.7918270.624080.509107
LEAShoots from the seedlings (10 cm shoot stage)0.37170800.5882080.392227
INF1Young developing inflorescences (5mm)0.2054850.409231.01010.348921
INF2Developing inflorescences (1-1.5 cm)0.4593180.8624740.2106780.580001
ROORoots from the seedlings (10 cm shoot stage)2.486300.6914251.03497
NODDeveloping tillers at six leaf stage, 3rd internode0.181281.022760.8045262.83626
CAR5Developing grain, bracts removed (5 DPA)0.60114700.2234120.434928
CAR15Developing grain, bracts removed (15 DPA)0.2112720.65712700.955809



CDS Structure of MLOC_82115






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82115.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_82115.1CUST_10955_PI427708083AvailableAvailablecontig_9995 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g33510.2 +2 2e-43 133 78/97 (80%) 13109.m07549 protein hydroxyproline-rich glycoprotein family protein, putative, expressed
TAIR PP10 AT2G33490.1 +2 3e-24 99 54/94 (57%) hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623