MLOC_82112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.23644.198055.295195.16334
LEAShoots from the seedlings (10 cm shoot stage)2.999221.527912.667181.73863
INF1Young developing inflorescences (5mm)7.921849.453346.771056.95491
INF2Developing inflorescences (1-1.5 cm)6.373336.020764.770096.48232
ROORoots from the seedlings (10 cm shoot stage)5.794425.088354.774494.93623
NODDeveloping tillers at six leaf stage, 3rd internode0.1011870.1790850.4313120.608767
CAR5Developing grain, bracts removed (5 DPA)6.041686.70455.583576.03024
CAR15Developing grain, bracts removed (15 DPA)0.7832630.7218120.5747141.74169



CDS Structure of MLOC_82112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82112.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248607.1NoneNoneNoneNone
MLOC_82112.1CUST_6873_PI427708080AvailableAvailablecontig_99937 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g02170.2 +2 4e-79 254 212/342 (62%) 13101.m00156 protein expressed protein
TAIR PP10 AT1G18850.1 +2 1e-31 125 73/177 (41%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6504928-6506127 REVERSE LENGTH=399