MLOC_82073 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.312191.012531.510651.35746
LEAShoots from the seedlings (10 cm shoot stage)4.11173.754693.664253.65448
INF1Young developing inflorescences (5mm)5.230817.183576.499596.14861
INF2Developing inflorescences (1-1.5 cm)1.595941.658021.428571.98711
ROORoots from the seedlings (10 cm shoot stage)2.70812.833383.91054.09386
NODDeveloping tillers at six leaf stage, 3rd internode5.98885.8783615.959628.3666
CAR5Developing grain, bracts removed (5 DPA)8.453868.895237.381439.3326
CAR15Developing grain, bracts removed (15 DPA)4.048732.694781.943058.00351



CDS Structure of MLOC_82073






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82073.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_82073.2CUST_17868_PI427708080AvailableAvailablecontig_99735 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g64970.1 -1 0.0 580 291/361 (81%) 13101.m07011 protein CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT5G08590.1 -1 3e-172 493 243/354 (69%) | Symbols: ASK2, SNRK2-1, SNRK2.1, SRK2G | SNF1-related protein kinase 2.1 | chr5:2783537-2785869 FORWARD LENGTH=353