MLOC_82045 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6726390.8542860.7688220.791296
LEAShoots from the seedlings (10 cm shoot stage)0.9837810.4295360.4831120.545428
INF1Young developing inflorescences (5mm)2.716621.912392.537421.98851
INF2Developing inflorescences (1-1.5 cm)1.747351.938892.30262.11065
ROORoots from the seedlings (10 cm shoot stage)0.4156471.260041.078351.31994
NODDeveloping tillers at six leaf stage, 3rd internode0.09530030.02106360.1159190.119274
CAR5Developing grain, bracts removed (5 DPA)1.879741.75452.122881.83238
CAR15Developing grain, bracts removed (15 DPA)0.5486670.5527910.4005341.20362



CDS Structure of MLOC_82045






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82045.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_82045.1CUST_16915_PI427708080AvailableAvailablecontig_99604 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21580.1 -2 0.0 633 345/533 (65%) 13102.m02418 protein PPR repeat containing protein
TAIR PP10 AT5G64320.1 -2 1e-60 219 141/475 (30%) Pentatricopeptide repeat (PPR) superfamily protein | chr5:25723247-25725439 REVERSE LENGTH=730