MLOC_82028 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.086223.458227.448823.9715
LEAShoots from the seedlings (10 cm shoot stage)18.30317.813719.303113.9247
INF1Young developing inflorescences (5mm)15.682121.161122.747815.3595
INF2Developing inflorescences (1-1.5 cm)26.664919.836519.372922.5387
ROORoots from the seedlings (10 cm shoot stage)41.647828.100828.468930.9982
NODDeveloping tillers at six leaf stage, 3rd internode31.515438.93844.1621114.273
CAR5Developing grain, bracts removed (5 DPA)28.044831.448829.822426.7382
CAR15Developing grain, bracts removed (15 DPA)26.138730.239827.671562.9706



CDS Structure of MLOC_82028






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82028.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371486NoneNoneNoneNone
MLOC_82028.1CUST_6867_PI427708080AvailableAvailablecontig_99492 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51166.1 +1 4e-134 393 225/288 (78%) 13104.m05207 protein expressed protein
TAIR PP10 AT4G19140.1 +1 4e-56 191 105/238 (44%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469830-10471275 FORWARD LENGTH=303